Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

Soil aggregation: Influence on microbial biomass and implications for biological processes

(2015) Vadakattu V.S.R. Gupta et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal Community Structure in Disease Suppressive Soils Assessed by 28S LSU Gene Sequencing

(2014) C. Ryan Penton et al.   PLoS One

Fungal Diversity in Permafrost and Tallgrass Prairie Soils under Experimental Warming Conditions

(2013) C. Ryan Penton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Development of a Real-Time Fluorescence Loop-Mediated Isothermal Amplification Assay for Rapid and Quantitative Detection of Fusarium oxysporum f. sp. cubense Tropical Race 4 In Soil

(2013) Xin Zhang et al.   PLoS One

Micrometer-scale physical structure and microbial composition of soil macroaggregates

(2013) Vanessa L. Bailey et al.   SOIL BIOLOGY & BIOCHEMISTRY

A DNA-based method for studying root responses to drought in field-grown wheat genotypes

(2013) Chun Y. Huang et al.   Scientific Reports

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

Influences of crop sequence, rainfall and irrigation, on relationships between Gaeumannomyces graminis var. tritici and take-all in New Zealand wheat fields

(2012) Sean L. Bithell et al.   AUSTRALASIAN PLANT PATHOLOGY

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics

(2011) Nathalie Lombard et al.   FEMS MICROBIOLOGY ECOLOGY

Damage to roots of Trifolium subterraneum L. (subterranean clover), failure of seedlings to establish and the presence of root pathogens during autumn-winter

(2011) R. J. Simpson et al.   GRASS AND FORAGE SCIENCE

Direct measurement of roots in soil for single and mixed species using a quantitative DNA-based method

(2011) Rebecca E. Haling et al.   PLANT AND SOIL

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage

(2008) K. Robert Clarke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY