Evolutionary and functional patterns of shared gene neighbourhood in fungi
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Title
Evolutionary and functional patterns of shared gene neighbourhood in fungi
Authors
Keywords
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Journal
Nature Microbiology
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-09-17
DOI
10.1038/s41564-019-0552-0
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Note: Only part of the references are listed.- Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway
- (2019) Eduard Ocaña-Pallarès et al. PLoS Genetics
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- (2017) Hannah T. Reynolds et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2017) Johan Reimegård et al. NUCLEIC ACIDS RESEARCH
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- (2017) Raúl A. Ortiz-Merino et al. PLOS BIOLOGY
- Several steps of lateral gene transfer followed by events of ‘birth-and-death’ evolution shaped a fungal sorbicillinoid biosynthetic gene cluster
- (2016) Irina S. Druzhinina et al. BMC EVOLUTIONARY BIOLOGY
- Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi
- (2016) Marina Marcet-Houben et al. FUNGAL GENETICS AND BIOLOGY
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes
- (2015) Thomas Wolf et al. BIOINFORMATICS
- Genome, Transcriptome, and Functional Analyses ofPenicillium expansumProvide New Insights Into Secondary Metabolism and Pathogenicity
- (2015) Ana-Rosa Ballester et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Translating biosynthetic gene clusters into fungal armor and weaponry
- (2015) Nancy P Keller Nature Chemical Biology
- Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
- (2015) Marina Marcet-Houben et al. PLOS BIOLOGY
- Fungal metabolic gene clusters—caravans traveling across genomes and environments
- (2015) Jennifer H. Wisecaver et al. Frontiers in Microbiology
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- The Evolution of Fungal Metabolic Pathways
- (2014) Jennifer H. Wisecaver et al. PLoS Genetics
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Horizontal Transfer and Death of a Fungal Secondary Metabolic Gene Cluster
- (2012) Matthew A. Campbell et al. Genome Biology and Evolution
- Why biosynthetic genes for chemical defense compounds cluster
- (2012) Adam M. Takos et al. TRENDS IN PLANT SCIENCE
- Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
- (2012) Robin A. Ohm et al. PLoS Pathogens
- Coexpression of Linked Gene Pairs Persists Long after Their Separation
- (2011) G.-Z. Wang et al. Genome Biology and Evolution
- TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
- (2011) Marina Marcet-Houben et al. NUCLEIC ACIDS RESEARCH
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi
- (2011) James K Hane et al. GENOME BIOLOGY
- Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi
- (2010) Jason C. Slot et al. CURRENT BIOLOGY
- SMURF: Genomic mapping of fungal secondary metabolite clusters
- (2010) Nora Khaldi et al. FUNGAL GENETICS AND BIOLOGY
- PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
- (2010) J. Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Analysis of Gene Order Conservation in Eukaryotes Identifies Transcriptionally and Functionally Linked Genes
- (2010) Marcela Dávila López et al. PLoS One
- Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
- (2010) J. C. Slot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Operons
- (2009) Anne E. Osbourn et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Acquisition of prokaryotic genes by fungal genomes
- (2009) Marina Marcet-Houben et al. TRENDS IN GENETICS
- Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication
- (2009) Li-Jun Ma et al. PLoS Genetics
- Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
- (2008) Nora Khaldi et al. GENOME BIOLOGY
- Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli
- (2008) Morgan N Price et al. GENOME BIOLOGY
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