Discovery of Genomic Characteristics and Selection Signatures in Korean Indigenous Goats Through Comparison of 10 Goat Breeds

Detection of Selection Signatures Among Brazilian, Sri Lankan, and Egyptian Chicken Populations Under Different Environmental Conditions

(2019) Muhammed Walugembe et al.   Frontiers in Genetics

Whole-Genome Sequencing of Three Native Cattle Breeds Originating From the Northernmost Cattle Farming Regions

(2019) Melak Weldenegodguad et al.   Frontiers in Genetics

Genetic Basis of Phenotypic Differences Between Chinese Yunling Black Goats and Nubian Goats Revealed by Allele-Specific Expression in Their F1 Hybrids

(2019) Yanhong Cao et al.   Frontiers in Genetics

Genomic Characterisation of the Indigenous Irish Kerry Cattle Breed

(2018) Sam Browett et al.   Frontiers in Genetics

Whole-Genome Resequencing of Red Junglefowl and Indigenous Village Chicken Reveal New Insights on the Genome Dynamics of the Species

(2018) Raman A. Lawal et al.   Frontiers in Genetics

Genetic diversity of five Chinese goat breeds assessed by microsatellite markers

(2018) J.Y. Li et al.   CZECH JOURNAL OF ANIMAL SCIENCE

Whole-genome sequencing reveals selection signatures associated with important traits in six goat breeds

(2018) Jiazhong Guo et al.   Scientific Reports

Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds

(2018) Robert B. Onzima et al.   Frontiers in Genetics

Genetic Diversity and Population Structure of Ethiopian Sheep Populations Revealed by High-Density SNP Markers

(2017) Zewdu Edea et al.   Frontiers in Genetics

Multi-omics enrichment analysis using the GeneTrail2 web service

(2016) Daniel Stöckel et al.   BIOINFORMATICS

Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions

(2016) Zhaohua Liu et al.   BMC GENOMICS

Exome sequencing reveals genetic differentiation due to high-altitude adaptation in the Tibetan cashmere goat (Capra hircus)

(2016) Shen Song et al.   BMC GENOMICS

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

(2016) Ji Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing

(2016) Wonseok Lee et al.   MOLECULES AND CELLS

Scanning of selection signature provides a glimpse into important economic traits in goats (Capra hircus)

(2016) Dailu Guan et al.   Scientific Reports

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

(2016) Simon Boitard et al.   PLoS Genetics

Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits

(2016) Xiaolong Wang et al.   Scientific Reports

Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation

(2015) F. Racimo   GENETICS

Detection of selective sweeps in structured populations: a comparison of recent methods

(2015) Alexandra I. Vatsiou et al.   MOLECULAR ECOLOGY

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Characterization of genetic diversity and gene mapping in two Swedish local chicken breeds

(2015) Anna M. Johansson et al.   Frontiers in Genetics

Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data

(2015) Badr Benjelloun et al.   Frontiers in Genetics

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

(2014) Shiping Liu et al.   CELL

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

NCBI Viral Genomes Resource

(2014) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

Design and Characterization of a 52K SNP Chip for Goats

(2014) Gwenola Tosser-Klopp et al.   PLoS One

Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication

(2014) Mingzhou Li et al.   Scientific Reports

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

The Crystal Structure of Lipopolysaccharide Binding Protein Reveals the Location of a Frequent Mutation that Impairs Innate Immunity

(2013) Jana K. Eckert et al.   IMMUNITY

Domestication Process of the Goat Revealed by an Analysis of the Nearly Complete Mitochondrial Protein-Encoding Genes

(2013) Koh Nomura et al.   PLoS One

Effective Population Size, Genetic Variation, and Their Relevance for Conservation: The Bighorn Sheep in Tiburon Island and Comparisons with Managed Artiodactyls

(2013) Jaime Gasca-Pineda et al.   PLoS One

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

(2011) Saber Qanbari et al.   BMC GENOMICS

Last hunter-gatherers and first farmers of Europe

(2011) Anne Tresset et al.   COMPTES RENDUS BIOLOGIES

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A genome-wide scan for signatures of recent selection in Holstein cattle

(2010) S. Qanbari et al.   ANIMAL GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Effect of Clinical Outbreaks of Salmonellosis on the Prevalence of Fecal Salmonella Shedding Among Dairy Cattle in New York

(2010) Kevin J. Cummings et al.   Foodborne Pathogens and Disease

A two-step method for detecting selection signatures using genetic markers

(2010) DANIEL GIANOLA et al.   Genetics Research

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

Adaptation and diversification on islands

(2009) Jonathan B. Losos et al.   NATURE

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Recent and Widespread Rapid Morphological Change in Rodents

(2009) Oliver R. W. Pergams et al.   PLoS One

The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals

(2008) S. Naderi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are cattle, sheep, and goats endangered species?

(2007) P. TABERLET et al.   MOLECULAR ECOLOGY