Extensive Cryptic Diversity Within the Physalaemus cuvieri–Physalaemus ephippifer Species Complex (Amphibia, Anura) Revealed by Cytogenetic, Mitochondrial, and Genomic Markers

Sex Chromosome Differentiation in the Frog Genus Pseudis Involves Satellite DNA and Chromosome Rearrangements

(2018) Kaleb P. Gatto et al.   Frontiers in Genetics

Diversification of the widespread neotropical frog Physalaemus cuvieri in response to Neogene-Quaternary geological events and climate dynamics

(2018) Núbia Esther de Oliveira Miranda et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Meeting the challenge of DNA barcoding Neotropical amphibians: polymerase chain reaction optimization and new COI primers

(2017) Mariana L. Lyra et al.   Molecular Ecology Resources

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Did sex chromosome turnover promote divergence of the major mammal groups?

(2016) Jennifer A. M. Graves   BIOESSAYS

Phylogenetic relationships of toads of theRhinella granulosagroup (Anura: Bufonidae): a molecular perspective with comments on hybridization and introgression

(2015) Martín O. Pereyra et al.   CLADISTICS

Competing paradigms of Amazonian diversification and the Pleistocene refugium hypothesis

(2015) Ivonne J. Garzón-Orduña et al.   JOURNAL OF BIOGEOGRAPHY

The trans-riverine genetic structure of 28 Amazonian frog species is dependent on life history

(2015) Antoine Fouquet et al.   JOURNAL OF TROPICAL ECOLOGY

Phylogeny of frogs from the genus Physalaemus (Anura, Leptodactylidae) inferred from mitochondrial and nuclear gene sequences

(2015) Luciana B. Lourenço et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Insights from Integrative Systematics Reveal Cryptic Diversity in Pristimantis Frogs (Anura: Craugastoridae) from the Upper Amazon Basin

(2015) H. Mauricio Ortega-Andrade et al.   PLoS One

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Comparative cytogenetics of Physalaemus albifrons and Physalaemus cuvieri species groups (Anura, Leptodactylidae)

(2014) Luciana Lourenço et al.   Comparative Cytogenetics

Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism

(2014) M Álvarez-Presas et al.   HEREDITY

Description and Phylogenetic Position of a New Species ofOreobates(Anura: Craugastoridae) from Northwestern Argentina

(2014) Martín O. Pereyra et al.   HERPETOLOGICA

Higher levels of sex chromosome heteromorphism are associated with markedly stronger reproductive isolation

(2014) Thiago G. Lima   Nature Communications

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

Comparative cytogenetic analysis of some species of the Dendropsophus microcephalus group (Anura, Hylidae) in the light of phylogenetic inferences

(2013) Lilian Medeiros et al.   BMC GENETICS

Improved Reversible Jump Algorithms for Bayesian Species Delimitation

(2013) Bruce Rannala et al.   GENETICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships of a Patagonian frog radiation, theAlsodes + Eupsophusclade (Anura: Alsodidae), with comments on the supposed paraphyly ofEupsophus

(2012) Boris L. Blotto et al.   CLADISTICS

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

From Amazonia to the Atlantic forest: Molecular phylogeny of Phyzelaphryninae frogs reveals unexpected diversity and a striking biogeographic pattern emphasizing conservation challenges

(2012) Antoine Fouquet et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

High levels of cryptic species diversity uncovered in Amazonian frogs

(2011) W. C. Funk et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reservoirs of richness: least disturbed tropical forests are centres of undescribed species diversity

(2011) X. Giam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Phylogenetic Approach to Conserving Amazonian Biodiversity

(2010) FEDERICO LÓPEZ-OSORIO et al.   CONSERVATION BIOLOGY

Heteromorphic Z and W sex chromosomes in Physalaemus ephippifer (Steindachner, 1864) (Anura, Leiuperidae)

(2010) Juliana Nascimento et al.   GENETICA

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Polytypic and polymorphic cytogenetic variations in the widespread anuran Physalaemus cuvieri (Anura, Leiuperidae) with emphasis on nucleolar organizing regions

(2009) YEDA R. S. D QUINDERÉ et al.   BIOLOGICAL RESEARCH

Deciphering the products of evolution at the species level: the need for an integrative taxonomy

(2009) José M. Padial et al.   ZOOLOGICA SCRIPTA

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Sex chromosomes and speciation in Drosophila

(2008) Daven C. Presgraves   TRENDS IN GENETICS