Meeting the challenge of DNA barcoding Neotropical amphibians: polymerase chain reaction optimization and new COI primers

Assessing DNA Barcodes for Species Identification in North American Reptiles and Amphibians in Natural History Collections

(2016) E. Anne Chambers et al.   PLoS One

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Comparison of heuristic approaches to the generalized tree alignment problem

(2015) Eric Ford et al.   CLADISTICS

Improving biodiversity assessment of anuran amphibians using DNA barcoding of tadpoles. Case studies from Southeast Asia

(2015) Stéphane Grosjean et al.   COMPTES RENDUS BIOLOGIES

DNA Barcoding Identifies Illegal Parrot Trade: Figure 1.

(2015) Priscila F. M. Gonçalves et al.   JOURNAL OF HEREDITY

DNA Barcoding Survey of Anurans across the Eastern Cordillera of Colombia and the Impact of the Andes on Cryptic Diversity

(2015) Carlos E. Guarnizo et al.   PLoS One

DNA barcoding Madagascar’s amphibian fauna

(2014) R.G. Bina Perl et al.   AMPHIBIA-REPTILIA

Phylogeny, Taxonomic Revision, and Character Evolution of the GeneraChiasmocleisandSyncope(Anura, Microhylidae) in Amazonia, with Descriptions of Three New Species

(2014) Pedro L.V. Peloso et al.   BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY

New primers for DNA barcoding of digeneans and cestodes (Platyhelminthes)

(2014) Niels Van Steenkiste et al.   Molecular Ecology Resources

High Levels of Diversity Uncovered in a Widespread Nominal Taxon: Continental Phylogeography of the Neotropical Tree Frog Dendropsophus minutus

(2014) Marcelo Gehara et al.   PLoS One

Taxonomic review ofScinax fuscomarginatus(Lutz, 1925) and related species (Anura; Hylidae)

(2014) Francisco Brusquetti et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Systematics of the Neotropical GenusLeptodactylusFitzinger, 1826 (Anura: Leptodactylidae): Phylogeny, the Relevance of Non-molecular Evidence, and Species Accounts

(2014) Rafael O. de Sá et al.   South American Journal of Herpetology

From widespread to microendemic: molecular and acoustic analyses show that Ischnocnema guentheri (Amphibia: Brachycephalidae) is endemic to Rio de Janeiro, Brazil

(2013) Marcelo Gehara et al.   CONSERVATION GENETICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest

(2013) Luciana A. Fusinatto et al.   PLoS One

Evolutionary conservatism and convergence both lead to striking similarity in ecology, morphology and performance across continents in frogs

(2013) D. S. Moen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Systematics of spiny-backed treefrogs (Hylidae:Osteocephalus): an Amazonian puzzle

(2013) Karl-Heinz Jungfer et al.   ZOOLOGICA SCRIPTA

Enhanced primers for amplification of DNA barcodes from a broad range of marine metazoans

(2013) Jorge Lobo et al.   BMC ECOLOGY

A critical review on the utility of DNA barcoding in biodiversity conservation

(2012) P. Krishna Krishnamurthy et al.   BIODIVERSITY AND CONSERVATION

Delimiting genetic units in Neotropical toads under incomplete lineage sorting and hybridization

(2012) Maria Tereza C Thomé et al.   BMC EVOLUTIONARY BIOLOGY

Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera

(2012) Rafael O de Sá et al.   BMC EVOLUTIONARY BIOLOGY

Taxonomic Revision of the Scinax alter Species Complex (Anura: Hylidae)

(2012) Ivan Nunes et al.   COPEIA

Molecular-based rapid inventories of sympatric diversity: A comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of amphibians

(2012) Andrea Paz et al.   JOURNAL OF BIOSCIENCES

Cold Code: the global initiative to DNA barcode amphibians and nonavian reptiles

(2012) Robert W. Murphy et al.   Molecular Ecology Resources

New taxonomy and old collections: integrating DNA barcoding into the collection curation process

(2012) N. PUILLANDRE et al.   Molecular Ecology Resources

Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

(2012) SAMUEL D. J. BROWN et al.   Molecular Ecology Resources

First Large-Scale DNA Barcoding Assessment of Reptiles in the Biodiversity Hotspot of Madagascar, Based on Newly Designed COI Primers

(2012) Zoltán T. Nagy et al.   PLoS One

Measuring the distance between multiple sequence alignments

(2011) B. P. Blackburne et al.   BIOINFORMATICS

On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature

(2011) Amrita Srivathsan et al.   CLADISTICS

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Universal COI primers for DNA barcoding amphibians

(2011) JING CHE et al.   Molecular Ecology Resources

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

How DNA Barcodes Complement Taxonomy and Explore Species Diversity: The Case Study of a Poorly Understood Marine Fauna

(2011) Jun Chen et al.   PLoS One

High levels of cryptic species diversity uncovered in Amazonian frogs

(2011) W. C. Funk et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improving sequencing quality from PCR products containing long mononucleotide repeats

(2010) Aron Fazekas et al.   BIOTECHNIQUES

Recovery of the mitochondrial COI barcode region in diverse Hexapoda through tRNA-based primers

(2010) Doo-Sang Park et al.   BMC GENOMICS

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama

(2010) A. J. Crawford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity

(2009) DANIEL H. JANZEN et al.   Molecular Ecology Resources

Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory

(2009) D. R. Vieites et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA barcoding detects market substitution in North American seafood

(2008) Eugene H.-K. Wong et al.   FOOD RESEARCH INTERNATIONAL

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA BARCODING: CO1 DNA barcoding amphibians: take the chance, meet the challenge

(2007) M. ALEX SMITH et al.   Molecular Ecology Resources