A Shift in Porcine Circovirus 3 (PCV‐3) History Paradigm: Phylodynamic Analyses Reveal an Ancient Origin and Prolonged Undetected Circulation in the Worldwide Swine Population

Molecular Detection and Phylogenetic Analysis of Porcine Circovirus Type 3 in 21 Provinces of China during 2015-2017

(2019) Shanshan Qi et al.   Transboundary and Emerging Diseases

An epidemiological investigation of porcine circovirus 3 infection in cattle in Shandong province, China

(2019) Wei Wang et al.   BMC Veterinary Research

Molecular detection and sequence analysis of porcine circovirus type 3 in sow sera from farms with prolonged histories of reproductive problems in Hunan, China

(2018) Yawen Zou et al.   ARCHIVES OF VIROLOGY

The analysis of genome composition and codon bias reveals distinctive patterns between avian and mammalian circoviruses which suggest a potential recombinant origin for Porcine circovirus 3

(2018) Giovanni Franzo et al.   PLoS One

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Retrospective study of porcine circovirus 3 infection in China

(2018) J. Sun et al.   Transboundary and Emerging Diseases

Retrospective detection of Porcine circovirus 3 (PCV-3) in pig serum samples from Spain

(2018) F. Klaumann et al.   Transboundary and Emerging Diseases

Full-genome sequencing of porcine circovirus 3 field strains from Denmark, Italy and Spain demonstrates a high within-Europe genetic heterogeneity

(2018) G. Franzo et al.   Transboundary and Emerging Diseases

First report of wild boar susceptibility to Porcine circovirus type 3: High prevalence in the Colli Euganei Regional Park (Italy) in the absence of clinical signs

(2018) Giovanni Franzo et al.   Transboundary and Emerging Diseases

Porcine circovirus type 3: a threat to the pig industry?

(2018) Giovanni Franzo et al.   VETERINARY RECORD

Full genome characterization of porcine circovirus type 3 isolates reveals the existence of two distinct groups of virus strains

(2018) Robert Fux et al.   Virology Journal

Evolutionary analysis of Porcine circovirus 3 (PCV3) indicates an ancient origin for its current strains and a worldwide dispersion

(2018) Giuliana Loreto Saraiva et al.   VIRUS GENES

Detection and genetic characterisation of porcine circovirus 3 from pigs in Sweden

(2018) Xingyu Ye et al.   VIRUS GENES

Insights into the Genetic and Host Adaptability of Emerging Porcine Circovirus 3

(2018) Gairu Li et al.   Virulence

Origin, Genetic Diversity, and Evolutionary Dynamics of Novel Porcine Circovirus 3

(2018) Gairu Li et al.   Advanced Science

Porcine circovirus 3 is highly prevalent in serum and tissues and may persistently infect wild boar (Sus scrofa scrofa )

(2018) Francini Klaumann et al.   Transboundary and Emerging Diseases

GI-16 lineage (624/I or Q1), there and back again: The history of one of the major threats for poultry farming of our era

(2018) Giovanni Franzo et al.   PLoS One

Genome characterization of a porcine circovirus type 3 in South China

(2017) H. Shen et al.   Transboundary and Emerging Diseases

The occurrence of porcine circovirus 3 without clinical infection signs in Shandong Province

(2017) S. Zheng et al.   Transboundary and Emerging Diseases

First detection of porcine circovirus type 3 on commercial pig farms in Poland

(2017) T. Stadejek et al.   Transboundary and Emerging Diseases

Insights into the epidemic characteristics and evolutionary history of the novel porcine circovirus type 3 in southern China

(2017) X. Fu et al.   Transboundary and Emerging Diseases

Identification and genetic characterization of porcine circovirus type 3 in China

(2017) X. Ku et al.   Transboundary and Emerging Diseases

Full-Genome Sequence of Porcine Circovirus type 3 recovered from serum of sows with stillbirths in Brazil

(2017) C. Tochetto et al.   Transboundary and Emerging Diseases

Detection and genetic characterization of Porcine circovirus type 3 in Italy

(2017) S. Faccini et al.   Transboundary and Emerging Diseases

Porcine circovirus type 3 in the UK

(2017) P. J. Collins et al.   VETERINARY RECORD

Comparative epidemiology of porcine circovirus type 3 in pigs with different clinical presentations

(2017) Shao-Lun Zhai et al.   Virology Journal

Think globally, act locally: Phylodynamic reconstruction of infectious bronchitis virus (IBV) QX genotype (GI-19 lineage) reveals different population dynamics and spreading patterns when evaluated on different epidemiological scales

(2017) Giovanni Franzo et al.   PLoS One

Time-Dependent Rate Phenomenon in Viruses

(2016) Pakorn Aiewsakun et al.   JOURNAL OF VIROLOGY

A Novel Porcine Circovirus Distantly Related to Known Circoviruses Is Associated with Porcine Dermatitis and Nephropathy Syndrome and Reproductive Failure

(2016) Rachel Palinski et al.   JOURNAL OF VIROLOGY

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

(2016) Filip Bielejec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms

(2016) Giovanni Franzo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Detection of a novel circovirus PCV3 in pigs with cardiac and multi-systemic inflammation

(2016) Tung Gia Phan et al.   Virology Journal

Porcine circovirus type 2 (PCV2) evolution before and after the vaccination introduction: A large scale epidemiological study

(2016) Giovanni Franzo et al.   Scientific Reports

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Genetic diversity of porcine circovirus type 2 and implications for detection and control

(2015) M.A. Ssemadaali et al.   RESEARCH IN VETERINARY SCIENCE

Genetic characterisation of Porcine circovirus type 2 (PCV2) strains from feral pigs in the Brazilian Pantanal: An opportunity to reconstruct the history of PCV2 evolution

(2015) Giovanni Franzo et al.   VETERINARY MICROBIOLOGY

Global migration of influenza A viruses in swine

(2015) Martha I. Nelson et al.   Nature Communications

A Case for the Ancient Origin of Coronaviruses

(2013) J. O. Wertheim et al.   JOURNAL OF VIROLOGY

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The natural history of porcine circovirus type 2: From an inoffensive virus to a devastating swine disease?

(2013) Joaquim Segalés et al.   VETERINARY MICROBIOLOGY

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Spread like a wildfire—The omnipresence of porcine circovirus type 2 (PCV2) and its ever-expanding association with diseases in pigs

(2011) Xiang-Jin Meng   VIRUS RESEARCH

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

(2009) C. Firth et al.   JOURNAL OF VIROLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Post-Weaning Multisystemic Wasting Syndrome and Other PCV2-Related Problems in Pigs: a 12-Year Experience

(2008) F. Madec et al.   Transboundary and Emerging Diseases