Phenotyping Plant Responses to Biotic Stress by Chlorophyll Fluorescence Imaging

Review: New sensors and data-driven approaches—A path to next generation phenomics

(2019) Thomas Roitsch et al.   PLANT SCIENCE

High-throughput phenotyping for crop improvement in the genomics era

(2019) Reyazul Rouf Mir et al.   PLANT SCIENCE

Diurnal and Seasonal Variations in Chlorophyll Fluorescence Associated with Photosynthesis at Leaf and Canopy Scales

(2019) Petya Campbell et al.   Remote Sensing

Influence of 3D Spruce Tree Representation on Accuracy of Airborne and Satellite Forest Reflectance Simulated in DART

(2019) Růžena Janoutová et al.   Forests

Spatial referencing of chlorophyll fluorescence images for quantitative assessment of infection propagation in leaves demonstrated on the ice plant: Botrytis cinerea pathosystem

(2019) Joanna Sekulska-Nalewajko et al.   Plant Methods

Sun-Induced Chlorophyll Fluorescence II: Review of Passive Measurement Setups, Protocols, and Their Application at the Leaf to Canopy Level

(2019) Aasen et al.   Remote Sensing

In Situ Hyperspectral Remote Sensing for Monitoring of Alpine Trampled and Recultivated Species

(2019) Kycko et al.   Remote Sensing

Estimation of Chlorophyll Fluorescence at Different Scales: A Review

(2019) Zhuoya Ni et al.   SENSORS

RNA-seq analysis and fluorescence imaging of melon powdery mildew disease reveal an orchestrated reprogramming of host physiology

(2019) Álvaro Polonio et al.   Scientific Reports

Water relation, leaf gas exchange and chlorophyll a fluorescence imaging of soybean leaves infected with Colletotrichum truncatum

(2018) Carla Silva Dias et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Chl Fluorescence Parameters and Leaf Reflectance Indices Allow Monitoring Changes in the Physiological Status of Quercus ilex L. under Progressive Water Deficit

(2018) Domingo Sancho-Knapik et al.   Forests

Effects of Heterogeneity within Tree Crowns on Airborne-Quantified SIF and the CWSI as Indicators of Water Stress in the Context of Precision Agriculture

(2018) Carlos Camino et al.   Remote Sensing

Detection of Bacterial Infection in Melon Plants by Classification Methods Based on Imaging Data

(2018) Mónica Pineda et al.   Frontiers in Plant Science

A Method of High Throughput Monitoring Crop Physiology Using Chlorophyll Fluorescence and Multispectral Imaging

(2018) Heng Wang et al.   Frontiers in Plant Science

Sun-Induced Chlorophyll Fluorescence, Photosynthesis, and Light Use Efficiency of a Soybean Field from Seasonally Continuous Measurements

(2018) Guofang Miao et al.   Journal of Geophysical Research-Biogeosciences

Sun-induced chlorophyll fluorescence is more strongly related to absorbed light than to photosynthesis at half-hourly resolution in a rice paddy

(2018) Kaige Yang et al.   REMOTE SENSING OF ENVIRONMENT

Potential of Photochemical Reflectance Index for Indicating Photochemistry and Light Use Efficiency in Leaves of European Beech and Norway Spruce Trees

(2018) Daniel Kováč et al.   Remote Sensing

Canopy temperature from an Unmanned Aerial Vehicle as an indicator of tree stress associated with red band needle blight severity

(2018) Magdalena Smigaj et al.   FOREST ECOLOGY AND MANAGEMENT

Relative functional and optical absorption cross-sections of PSII and other photosynthetic parameters monitored in situ, at a distance with a time resolution of a few seconds, using a prototype light induced fluorescence transient (LIFT) device

(2017) Barry Osmond et al.   FUNCTIONAL PLANT BIOLOGY

Field Scanalyzer: An automated robotic field phenotyping platform for detailed crop monitoring

(2017) Nicolas Virlet et al.   FUNCTIONAL PLANT BIOLOGY

DART: Recent Advances in Remote Sensing Data Modeling With Atmosphere, Polarization, and Chlorophyll Fluorescence

(2017) Jean-Philippe Gastellu-Etchegorry et al.   IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing

Using remotely sensed spectral reflectance to indicate leaf photosynthetic efficiency derived from active fluorescence measurements

(2017) Yi Peng et al.   Journal of Applied Remote Sensing

Benefits of hyperspectral imaging for plant disease detection and plant protection: a technical perspective

(2017) Stefan Thomas et al.   Journal of Plant Diseases and Protection

Impact of compatible and incompatible barley—Blumeria graminis f.sp. hordei interactions on chlorophyll fluorescence parameters

(2017) Anna Brugger et al.   Journal of Plant Diseases and Protection

Chlorophyll Fluorescence and Reflectance-Based Non-Invasive Quantification of Blast, Bacterial Blight and Drought Stresses in Rice

(2017) David Šebela et al.   PLANT AND CELL PHYSIOLOGY

Virulence determines beneficial trade-offs in the response of virus-infected plants to drought via induction of salicylic acid

(2017) Emmanuel Aguilar et al.   PLANT CELL AND ENVIRONMENT

Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses

(2017) Henning Tschiersch et al.   Plant Methods

Assessing the effects of forest health on sun-induced chlorophyll fluorescence using the FluorFLIGHT 3-D radiative transfer model to account for forest structure

(2017) R. Hernández-Clemente et al.   REMOTE SENSING OF ENVIRONMENT

Surface Reflectance and Sun-Induced Fluorescence Spectroscopy Measurements Using a Small Hyperspectral UAS

(2017) et al.   Remote Sensing

Early Detection of Plant Physiological Responses to Different Levels of Water Stress Using Reflectance Spectroscopy

(2017) Matthew Maimaitiyiming et al.   Remote Sensing

Estimating Chlorophyll Fluorescence Parameters Using the Joint Fraunhofer Line Depth and Laser-Induced Saturation Pulse (FLD-LISP) Method in Different Plant Species

(2017) Parinaz Rahimzadeh-Bajgiran et al.   Remote Sensing

Do Daily and Seasonal Trends in Leaf Solar Induced Fluorescence Reflect Changes in Photosynthesis, Growth or Light Exposure?

(2017) Rhys Wyber et al.   Remote Sensing

Gross Primary Production of a Wheat Canopy Relates Stronger to Far Red Than to Red Solar-Induced Chlorophyll Fluorescence

(2017) Yves Goulas et al.   Remote Sensing

Response of Canopy Solar-Induced Chlorophyll Fluorescence to the Absorbed Photosynthetically Active Radiation Absorbed by Chlorophyll

(2017) Shanshan Du et al.   Remote Sensing

Diurnal Cycle Relationships between Passive Fluorescence, PRI and NPQ of Vegetation in a Controlled Stress Experiment

(2017) et al.   Remote Sensing

Alterations in rice chloroplast integrity, photosynthesis and metabolome associated with pathogenesis of Rhizoctonia solani

(2017) Srayan Ghosh et al.   Scientific Reports

Changes in leaf gas exchange, chlorophyll a fluorescence and antioxidant metabolism within wheat leaves infected by Bipolaris sorokiniana

(2016) J.A. Rios et al.   ANNALS OF APPLIED BIOLOGY

Mitochondrial energy-dissipation pathway and cellular redox disruption compromises Arabidopsis resistance to turnip crinkle virus infection

(2016) Xiao-jun Pu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

GOLDEN2-LIKE transcription factors coordinate the tolerance to Cucumber mosaic virus in Arabidopsis

(2016) Xue-Ying Han et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Laser-induced fluorescence spectroscopy applied to early diagnosis of citrus Huanglongbing

(2016) Anielle C. Ranulfi et al.   BIOSYSTEMS ENGINEERING

Alterations in primary and secondary metabolism inVitis vinifera‘Malvasía de Banyalbufar’ upon infection with Grapevine leafroll-associated virus 3

(2016) Rafael Montero et al.   PHYSIOLOGIA PLANTARUM

Sun-induced chlorophyll fluorescence from high-resolution imaging spectroscopy data to quantify spatio-temporal patterns of photosynthetic function in crop canopies

(2016) Francisco Pinto et al.   PLANT CELL AND ENVIRONMENT

Magnesium decreases leaf scald symptoms on rice leaves and preserves their photosynthetic performance

(2016) S.D. Tatagiba et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Seasonal stability of chlorophyll fluorescence quantified from airborne hyperspectral imagery as an indicator of net photosynthesis in the context of precision agriculture

(2016) P.J. Zarco-Tejada et al.   REMOTE SENSING OF ENVIRONMENT

Picturing pathogen infection in plants

(2016) Matilde Barón et al.   ZEITSCHRIFT FUR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES

Temporal and Spatial Resolution of Activated Plant Defense Responses in Leaves of Nicotiana benthamiana Infected with Dickeya dadantii

(2016) María L. Pérez-Bueno et al.   Frontiers in Plant Science

UAVs challenge to assess water stress for sustainable agriculture

(2015) J. Gago et al.   AGRICULTURAL WATER MANAGEMENT

Silicon partially preserves the photosynthetic performance of rice plants infected byMonographella albescens

(2015) S.D. Tatagiba et al.   ANNALS OF APPLIED BIOLOGY

Metabolic responses of avocado plants to stress induced by Rosellinia necatrix analysed by fluorescence and thermal imaging

(2015) Espen Granum et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Sun-induced fluorescence - a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant

(2015) U. Rascher et al.   GLOBAL CHANGE BIOLOGY

Detection of mosaic virus disease in cassava plants by sunlight-induced fluorescence imaging: a pilot study for proximal sensing

(2015) Sadasivan Nair Raji et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

Estimation of solar-induced fluorescence using the canopy reflectance index

(2015) Zhuoya Ni et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

Estimating chlorophyll content and photochemical yield of photosystem II (ΦPSII) using solar-induced chlorophyll fluorescence measurements at different growing stages of attached leaves

(2015) Bayaer Tubuxin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Effects of Epoxiconozale and Pyraclostrobin Fungicides in the Infection Process ofHemileia vastatrixon Coffee Leaves as Determined by ChlorophyllaFluorescence Imaging

(2015) Jaime Honorato Júnior et al.   JOURNAL OF PHYTOPATHOLOGY

Phenoplant: a web resource for the exploration of large chlorophyll fluorescence image datasets

(2015) Céline Rousseau et al.   Plant Methods

Chlorophyll fluorescence imaging as a tool to monitor the progress of a root pathogen in a perennial plant

(2015) Dimitre A. Ivanov et al.   PLANTA

Far-red sun-induced chlorophyll fluorescence shows ecosystem-specific relationships to gross primary production: An assessment based on observational and modeling approaches

(2015) A. Damm et al.   REMOTE SENSING OF ENVIRONMENT

Chlorophyll fluorescence imaging to facilitate breeding of Bremia lactucae-resistant lettuce cultivars

(2014) E. Bauriegel et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Monitoring cashew seedlings during interactions with the fungus Lasiodiplodia theobromae using chlorophyll fluorescence imaging

(2014) C. R. Muniz et al.   PHOTOSYNTHETICA

Spatial and temporal dynamics of primary and secondary metabolism inPhaseolus vulgarischallenged byPseudomonas syringae

(2014) María Luisa Pérez-Bueno et al.   PHYSIOLOGIA PLANTARUM

Fusion of sensor data for the detection and differentiation of plant diseases in cucumber

(2014) C. A. Berdugo et al.   PLANT PATHOLOGY

Comparison of a compatible and an incompatible pepper-tobamovirus interaction by biochemical and non-invasive techniques: Chlorophyll a fluorescence, isothermal calorimetry and FT-Raman spectroscopy

(2014) Magdalena Rys et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Global and time-resolved monitoring of crop photosynthesis with chlorophyll fluorescence

(2014) L. Guanter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Review of Imaging Techniques for Plant Phenotyping

(2014) Lei Li et al.   SENSORS

Daily and seasonal dynamics of remotely sensed photosynthetic efficiency in tree canopies

(2014) R. Pieruschka et al.   TREE PHYSIOLOGY

Chlorophyll fluorescence for quantification of fungal foliar infection and assessment of the effectiveness of an induced systemic resistance activator

(2013) J. Tung et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications

(2013) E.H. Murchie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chlorophyll a fluorescence as a tool for a study of the Potato virus Y effects on photosynthesis of nontransgenic and transgenic Pssu-ipt tobacco

(2013) P. Spoustová et al.   PHOTOSYNTHETICA

High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis

(2013) Céline Rousseau et al.   Plant Methods

Spatio-temporal patterns of chlorophyll fluorescence and physiological and structural indices acquired from hyperspectral imagery as compared with carbon fluxes measured with eddy covariance

(2013) P.J. Zarco-Tejada et al.   REMOTE SENSING OF ENVIRONMENT

Imaging plants dynamics in heterogenic environments

(2012) Fabio Fiorani et al.   CURRENT OPINION IN BIOTECHNOLOGY

Herbivore induction of jasmonic acid and chemical defences reduce photosynthesis in Nicotiana attenuata

(2012) Paul D. Nabity et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Crosstalk Between PAMP-Triggered Immunity and Photosynthesis

(2012) Vera Göhre et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Elevated CO2 interacts with herbivory to alter chlorophyll fluorescence and leaf temperature in Betula papyrifera and Populus tremuloides

(2012) Paul D. Nabity et al.   OECOLOGIA

Herbivory of wild Manduca sexta causes fast down-regulation of photosynthetic efficiency in Datura wrightii: an early signaling cascade visualized by chlorophyll fluorescence

(2012) Greg A. Barron-Gafford et al.   PHOTOSYNTHESIS RESEARCH

Relationships between the photochemical reflectance index (PRI) and chlorophyll fluorescence parameters and plant pigment indices at different leaf growth stages

(2012) Parinaz Rahimzadeh-Bajgiran et al.   PHOTOSYNTHESIS RESEARCH

Detecting Suaeda salsa L. chlorophyll fluorescence response to salinity stress by using hyperspectral reflectance

(2011) Hao Zhang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Tracking viral movement in plants by means of chlorophyll fluorescence imaging

(2011) Mónica Pineda et al.   JOURNAL OF PLANT PHYSIOLOGY

Herbivore-specific elicitation of photosynthesis by mirid bug salivary secretions in the wild tobaccoNicotiana attenuata

(2011) Rayko Halitschke et al.   NEW PHYTOLOGIST

Photosynthetic alterations of pea leaves infected systemically by pea enation mosaic virus: A coordinated decrease in efficiencies of CO2 assimilation and photosystem II photochemistry

(2011) Helena Kyseláková et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Hyperspectral and Chlorophyll Fluorescence Imaging to Analyse the Impact of Fusarium culmorum on the Photosynthetic Integrity of Infected Wheat Ears

(2011) Elke Bauriegel et al.   SENSORS

Photosynthetic responses of lettuce to downy mildew infection and cytokinin treatment

(2010) Jitka Prokopová et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Chlorophyll fluorescence imaging of plant–pathogen interactions

(2010) Stephen Alexander Rolfe et al.   PROTOPLASMA

Combined effects of elevated CO2 and natural climatic variation on leaf spot diseases of redbud and sweetgum trees

(2009) Andrew J. McElrone et al.   ENVIRONMENTAL POLLUTION

Pre-symptomatic detection of Plasmopara viticola infection in grapevine leaves using chlorophyll fluorescence imaging

(2009) Ladislav Cséfalvay et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Spatial association of photosynthesis and chemical defense inArabidopsis thalianafollowing herbivory byTrichoplusia ni

(2009) Jennie Tang et al.   PHYSIOLOGIA PLANTARUM

Imaging chlorophyll fluorescence with an airborne narrow-band multispectral camera for vegetation stress detection

(2009) P.J. Zarco-Tejada et al.   REMOTE SENSING OF ENVIRONMENT

Suppression of Host Photosynthesis by the Parasitic Plant Rhinanthus minor

(2008) Duncan D. Cameron et al.   ANNALS OF BOTANY

Indirect suppression of photosynthesis on individual leaves by arthropod herbivory

(2008) Paul D. Nabity et al.   ANNALS OF BOTANY

Chlorophyll Fluorescence: A Probe of Photosynthesis In Vivo

(2008) Neil R. Baker   Annual Review of Plant Biology

Photosynthetic acclimation: Does the dynamic structure and macro-organisation of photosystem II in higher plant grana membranes regulate light harvesting states?

(2008) Peter Horton et al.   FEBS Journal

Conventional and combinatorial chlorophyll fluorescence imaging of tobamovirus-infected plants

(2008) M. Pineda et al.   PHOTOSYNTHETICA

Temporal and spatial changes of chlorophyll fluorescence as a basis for early and precise detection of leaf rust and powdery mildew infections in wheat leaves

(2008) Jan Kuckenberg et al.   PRECISION AGRICULTURE

Spatio-temporal variations of photosynthesis: the potential of optical remote sensing to better understand and scale light use efficiency and stresses of plant ecosystems

(2008) Uwe Rascher et al.   PRECISION AGRICULTURE

Linking physiological responses, chlorophyll fluorescence and hyperspectral imagery to detect salinity stress using the physiological reflectance index in the coastal shrub, Myrica cerifera

(2008) J NAUMANN et al.   REMOTE SENSING OF ENVIRONMENT