Transcriptional Regulation of Carotenoid Biosynthesis in Plants: So Many Regulators, So Little Consensus

DRL1, Encoding A NAC Transcription Factor, Is Involved in Leaf Senescence in Grapevine

(2019) Ziguo Zhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

(2019) Dong Zhou et al.   Horticulture Research

Tomato (Solanum lycopersicum) SlIPT4, encoding an isopentenyltransferase, is involved in leaf senescence and lycopene biosynthesis during fruit ripening

(2018) Yong Zhang et al.   BMC PLANT BIOLOGY

A role for β,β-xanthophylls in Arabidopsis UV-B photoprotection

(2018) Julia Emiliani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interference with Clp protease impairs carotenoid accumulation during tomato fruit ripening

(2018) Lucio D’Andrea et al.   JOURNAL OF EXPERIMENTAL BOTANY

Carotenoid Metabolism in Plants: The Role of Plastids

(2018) Tianhu Sun et al.   Molecular Plant

SlPti4 Affects Regulation of Fruit Ripening, Seed Germination and Stress Responses by Modulating ABA Signaling in Tomato

(2018) Yufei Sun et al.   PLANT AND CELL PHYSIOLOGY

The Citrus Transcription Factor CsMADS6 Modulates Carotenoid Metabolism by Directly Regulating Carotenogenic Genes

(2018) Suwen Lu et al.   PLANT PHYSIOLOGY

A tomato MADS-box protein, SlCMB1, regulates ethylene biosynthesis and carotenoid accumulation during fruit ripening

(2018) Jianling Zhang et al.   Scientific Reports

A kiwifruit (Actinidia deliciosa ) R2R3-MYB transcription factor modulates chlorophyll and carotenoid accumulation

(2018) Charles Ampomah-Dwamena et al.   NEW PHYTOLOGIST

A tomato B-box protein Sl BBX20 modulates carotenoid biosynthesis by directly activating PHYTOENE SYNTHASE 1 , and is targeted for 26S proteasome-mediated degradation

(2018) Cheng Xiong et al.   NEW PHYTOLOGIST

Regulation of Carotenoid Pigmentation in Corollas of Petunia

(2018) Sanae Kishimoto et al.   PLANT MOLECULAR BIOLOGY REPORTER

From Golden Rice to aSTARice: Bioengineering Astaxanthin Biosynthesis in Rice Endosperm

(2018) Qinlong Zhu et al.   Molecular Plant

ZmPBF and ZmGAMYB transcription factors independently transactivate the promoter of the maize (Zea mays ) β-carotene hydroxylase 2 gene

(2018) Xin Jin et al.   NEW PHYTOLOGIST

A critical evaluation of the role of ethylene and MADS transcription factors in the network controlling fleshy fruit ripening

(2018) Shan Li et al.   NEW PHYTOLOGIST

TERF1 Regulates Nuclear Gene Expression Through Chloroplast Retrograde Signals

(2018) W. Wu et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Mechanisms suppressing carotenoid accumulation in flowers differ depending on the hybrid groups of lilies (Lilium spp.)

(2018) Xi Wang et al.   SCIENTIA HORTICULTURAE

Physiological and biochemical responses to high light and temperature stress in plants

(2017) Renata Szymańska et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

From carotenoids to strigolactones

(2017) Kun-Peng Jia et al.   JOURNAL OF EXPERIMENTAL BOTANY

An R2R3-MYB transcription factor represses the transformation of α- and β-branch carotenoids by negatively regulating expression of CrBCH2 and CrNCED5 in flavedo of Citrus reticulate

(2017) Feng Zhu et al.   NEW PHYTOLOGIST

Papaya CpEIN3a and CpNAC2 Co-operatively Regulate Carotenoid Biosynthesis-Related Genes CpPDS2/4, CpLCY-e and CpCHY-b During Fruit Ripening

(2017) Chang-chun Fu et al.   PLANT AND CELL PHYSIOLOGY

A histone deacetylase gene, SlHDA3, acts as a negative regulator of fruit ripening and carotenoid accumulation

(2017) Jun-E Guo et al.   PLANT CELL REPORTS

Integrated omics analysis of specialized metabolism in medicinal plants

(2017) Amit Rai et al.   PLANT JOURNAL

The regulation of carotenoid formation in tomato fruit

(2017) Eugenia M.A. Enfissi et al.   PLANT JOURNAL

Overexpression of SlPRE2, an atypical bHLH transcription factor, affects plant morphology and fruit pigment accumulation in tomato

(2017) Zhiguo Zhu et al.   Scientific Reports

Engineering Cellular Metabolism

(2016) Jens Nielsen et al.   CELL

The Papaya Transcription Factor CpNAC1 Modulates Carotenoid Biosynthesis through Activating Phytoene Desaturase Genes CpPDS2/4 during Fruit Ripening

(2016) Chang-chun Fu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Suppression of tomato SlNAC1 transcription factor delays fruit ripening

(2016) Chen Meng et al.   JOURNAL OF PLANT PHYSIOLOGY

PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1

(2016) Junghyun Kim et al.   PLANT CELL

Synthesis and Function of Apocarotenoid Signals in Plants

(2016) Xin Hou et al.   TRENDS IN PLANT SCIENCE

Ten Simple Rules for Developing Public Biological Databases

(2016) Mohamed Helmy et al.   PLoS Computational Biology

Multi-Omics Approach Identifies Molecular Mechanisms of Plant-Fungus Mycorrhizal Interaction

(2016) Peter E. Larsen et al.   Frontiers in Plant Science

Production of Reactive Oxygen Species by Photosystem II as a Response to Light and Temperature Stress

(2016) Pavel Pospíšil   Frontiers in Plant Science

Comprehensive Analysis of ABA Effects on Ethylene Biosynthesis and Signaling during Tomato Fruit Ripening

(2016) Wangshu Mou et al.   PLoS One

Carotenoid accumulation during tomato fruit ripening is modulated by the auxin-ethylene balance

(2015) Liyan Su et al.   BMC PLANT BIOLOGY

Transcriptomic and metabolomic data integration

(2015) Rachel Cavill et al.   BRIEFINGS IN BIOINFORMATICS

Carotenoid Metabolism in Plants

(2015) Nazia Nisar et al.   Molecular Plant

Regulation of Carotenoid Metabolism in Tomato

(2015) Lihong Liu et al.   Molecular Plant

Disruption of aCAROTENOID CLEAVAGE DIOXYGENASE 4gene converts flower colour from white to yellow inBrassicaspecies

(2015) Bao Zhang et al.   NEW PHYTOLOGIST

An R2R3-MYB transcription factor regulates carotenoid pigmentation inMimulus lewisiiflowers

(2015) Janelle M. Sagawa et al.   NEW PHYTOLOGIST

Tomato fruit carotenoid biosynthesis is adjusted to actual ripening progression by a light-dependent mechanism

(2015) Briardo Llorente et al.   PLANT JOURNAL

Ethylene control of fruit ripening: revisiting the complex network of transcriptional regulation

(2015) Mingchun Liu et al.   PLANT PHYSIOLOGY

The Zinc Finger Transcription FactorSlZFP2Negatively Regulates Abscisic Acid Biosynthesis and Fruit Ripening in Tomato

(2015) Lin Weng et al.   PLANT PHYSIOLOGY

Regulation of carotenoid biosynthesis by shade relies on specific subsets of antagonistic transcription factors and co-factors

(2015) Jordi Bou-Torrent et al.   PLANT PHYSIOLOGY

Strigolactone Regulates Leaf Senescence in Concert with Ethylene in Arabidopsis

(2015) Hiroaki Ueda et al.   PLANT PHYSIOLOGY

ArabidopsisDET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination

(2015) Hui Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ArabidopsisOR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis

(2015) Xiangjun Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1

(2015) Ling Zhu et al.   Nature Communications

Auxin Response Factor SlARF2 Is an Essential Component of the Regulatory Mechanism Controlling Fruit Ripening in Tomato

(2015) Yanwei Hao et al.   PLoS Genetics

A stranger in a strange land: the utility and interpretation of heterologous expression

(2015) Elena M. Kramer   Frontiers in Plant Science

Carotenoid metabolism and regulation in horticultural crops

(2015) Hui Yuan et al.   Horticulture Research

Overexpression of tomato SlNAC1transcription factor alters fruit pigmentation and softening

(2014) Nana Ma et al.   BMC PLANT BIOLOGY

Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences

(2014) Salma Balazadeh et al.   JOURNAL OF EXPERIMENTAL BOTANY

The F-box protein COI1 functions upstream of MYB305 to regulate primary carbohydrate metabolism in tobacco (Nicotiana tabacum L. cv. TN90)

(2014) Wenjing Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis

(2014) Anne Pfeiffer et al.   Molecular Plant

An Uncharacterized Apocarotenoid-Derived Signal Generated in  -Carotene Desaturase Mutants Regulates Leaf Development and the Expression of Chloroplast and Nuclear Genes in Arabidopsis

(2014) A.-O. Avendano-Vazquez et al.   PLANT CELL

Transcriptional Regulation of Fruit Ripening by Tomato FRUITFULL Homologs and Associated MADS Box Proteins

(2014) M. Fujisawa et al.   PLANT CELL

Arabidopsis DE-ETIOLATED1 Represses Photomorphogenesis by Positively Regulating Phytochrome-Interacting Factors in the Dark

(2014) J. Dong et al.   PLANT CELL

Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts

(2014) K. Maruyama et al.   PLANT PHYSIOLOGY

A Root Specific Induction of Carotenoid Biosynthesis Contributes to ABA Production upon Salt Stress in Arabidopsis

(2014) M. Águila Ruiz-Sola et al.   PLoS One

Overexpression of a novel MADS-box gene SlFYFL delays senescence, fruit ripening and abscission in tomato

(2014) Qiaoli Xie et al.   Scientific Reports

The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis

(2014) Carolin Delker et al.   Cell Reports

The HY5-PIF Regulatory Module Coordinates Light and Temperature Control of Photosynthetic Gene Transcription

(2014) Gabriela Toledo-Ortiz et al.   PLoS Genetics

Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit

(2013) Stefania Grassi et al.   BMC GENOMICS

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

A STAY-GREEN protein SlSGR1 regulates lycopene and β-carotene accumulation by interacting directly with SlPSY1 during ripening processes in tomato

(2013) Zhidan Luo et al.   NEW PHYTOLOGIST

A New Tomato NAC (NAM/ATAF1/2/CUC2) Transcription Factor, SlNAC4, Functions as a Positive Regulator of Fruit Ripening and Carotenoid Accumulation

(2013) Mingku Zhu et al.   PLANT AND CELL PHYSIOLOGY

Ectopic expression of aBZR1-1Dtranscription factor in brassinosteroid signalling enhances carotenoid accumulation and fruit quality attributes in tomato

(2013) Lihong Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

A Large-Scale Identification of Direct Targets of the Tomato MADS Box Transcription Factor RIPENING INHIBITOR Reveals the Regulation of Fruit Ripening

(2013) M. Fujisawa et al.   PLANT CELL

Tomato FRUITFULL homologues act in fruit ripening via forming MADS-box transcription factor complexes with RIN

(2013) Yoko Shima et al.   PLANT MOLECULAR BIOLOGY

A Tomato MADS-Box Transcription Factor, SlMADS1, Acts as a Negative Regulator of Fruit Ripening

(2013) T. Dong et al.   PLANT PHYSIOLOGY

Qualitative and quantitative control of carotenoid accumulation in flower petals

(2013) Akemi Ohmiya   SCIENTIA HORTICULTURAE

Diversity of Carotenoid Composition in Flower Petals

(2012) Akemi OHMIYA   JARQ-JAPAN AGRICULTURAL RESEARCH QUARTERLY

Zeaxanthin Protects Plant Photosynthesis by Modulating Chlorophyll Triplet Yield in Specific Light-harvesting Antenna Subunits

(2012) Luca Dall'Osto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ethylene independent induction of lycopene biosynthesis in tomato fruits by jasmonates

(2012) L. Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize

(2012) Nardjis Amiour et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Tomato FRUITFULL Homologs TDR4/FUL1 and MBP7/FUL2 Regulate Ethylene-Independent Aspects of Fruit Ripening

(2012) M. Bemer et al.   PLANT CELL

Light-dependent changes in plastid differentiation influence carotenoid gene expression and accumulation in carrot roots

(2012) Paulina Fuentes et al.   PLANT MOLECULAR BIOLOGY

The Path from  -Carotene to Carlactone, a Strigolactone-Like Plant Hormone

(2012) A. Alder et al.   SCIENCE

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II

(2011) Peter Jahns et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Identification of potential target genes for the tomato fruit-ripening regulator RIN by chromatin immunoprecipitation

(2011) Masaki Fujisawa et al.   BMC PLANT BIOLOGY

A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana

(2011) Stuart Meier et al.   BMC Systems Biology

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

DELLAs Regulate Chlorophyll and Carotenoid Biosynthesis to Prevent Photooxidative Damage during Seedling Deetiolation inArabidopsis

(2011) Soizic Cheminant et al.   PLANT CELL

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

Unraveling the regulatory network of the MADS box transcription factor RIN in fruit ripening

(2011) Guozheng Qin et al.   PLANT JOURNAL

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

Direct targets of the tomato-ripening regulator RIN identified by transcriptome and chromatin immunoprecipitation analyses

(2011) Masaki Fujisawa et al.   PLANTA

Integration of low temperature and light signaling during cold acclimation response in Arabidopsis

(2011) R. Catala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Perception of UV-B by the Arabidopsis UVR8 Protein

(2011) L. Rizzini et al.   SCIENCE

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

The carotenoid dioxygenase gene family in maize, sorghum, and rice

(2010) Ratnakar Vallabhaneni et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Isolation and functional characterization of Lycopene beta-cyclase (CYC-B) promoter from Solanum habrochaites

(2010) Monika Dalal et al.   BMC PLANT BIOLOGY

Enhanced Seed Carotenoid Levels and Branching in TransgenicBrassica napusExpressing theArabidopsismiR156bGene

(2010) Shu Wei et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Characterization of phytoene synthases from cassava and their involvement in abiotic stress-mediated responses

(2010) Jacobo Arango et al.   PLANTA

Differential expression of carotenoid-related genes determines diversified carotenoid coloration in floral tissues of Oncidium cultivars

(2010) Chung-Yi Chiou et al.   PLANTA

Functional Analysis of the Arlequin Mutant Corroborates the Essential Role of the ARLEQUIN/TAGL1 Gene during Reproductive Development of Tomato

(2010) Estela Giménez et al.   PLoS One

Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors

(2010) G. Toledo-Ortiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Source to sink: regulation of carotenoid biosynthesis in plants

(2010) Christopher I. Cazzonelli et al.   TRENDS IN PLANT SCIENCE

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis

(2009) Jean-Jacques Favory et al.   EMBO JOURNAL

Carotenoid composition and carotenogenic gene expression during Ipomoea petal development

(2009) Chihiro Yamamizo et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of ABA in triggering ethylene biosynthesis and ripening of tomato fruit

(2009) M. Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Carotenoid composition and changes in expression of carotenoid biosynthetic genes in tepals of Asiatic hybrid lily

(2009) M. Yamagishi et al.   PLANT BREEDING

Regulation of Carotenoid Composition and Shoot Branching in Arabidopsis by a Chromatin Modifying Histone Methyltransferase, SDG8

(2009) C. I. Cazzonelli et al.   PLANT CELL

Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

(2009) E. Oh et al.   PLANT CELL

The MYB305 Transcription Factor Regulates Expression of Nectarin Genes in the Ornamental Tobacco Floral Nectary

(2009) G. Liu et al.   PLANT CELL

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

(2009) J. Vrebalov et al.   PLANT CELL

Phytoene synthase activity controls the biosynthesis of carotenoids and the supply of their metabolic precursors in dark-grown Arabidopsis seedlings

(2009) Antía Rodríguez-Villalón et al.   PLANT JOURNAL

TOMATO AGAMOUS-LIKE 1 is a component of the fruit ripening regulatory network

(2009) Maxim Itkin et al.   PLANT JOURNAL

Carotenoid Crystal Formation in Arabidopsis and Carrot Roots Caused by Increased Phytoene Synthase Protein Levels

(2009) Dirk Maass et al.   PLoS One

Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

(2009) J. Shin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding of Light Signals by Plant Phytochromes and Their Interacting Proteins

(2008) Gabyong Bae et al.   Annual Review of Plant Biology

Expression of carotenoid biosynthesis genes during carrot root development

(2008) J. Clotault et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tomato strigolactones are derived from carotenoids and their biosynthesis is promoted by phosphate starvation

(2008) Juan Antonio López-Ráez et al.   NEW PHYTOLOGIST

SOMNUS, a CCCH-Type Zinc Finger Protein in Arabidopsis, Negatively Regulates Light-Dependent Seed Germination Downstream of PIL5

(2008) D. H. Kim et al.   PLANT CELL

Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes

(2008) H. Shen et al.   PLANT CELL

DNA-binding specificity, transcriptional activation potential, and therinmutation effect for the tomato fruit-ripening regulator RIN

(2008) Yasuhiro Ito et al.   PLANT JOURNAL

A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening

(2008) Zhefeng Lin et al.   PLANT JOURNAL

The Maize Phytoene Synthase Gene Family: Overlapping Roles for Carotenogenesis in Endosperm, Photomorphogenesis, and Thermal Stress Tolerance

(2008) F. Li et al.   PLANT PHYSIOLOGY

A Third Phytoene Synthase Is Devoted to Abiotic Stress-Induced Abscisic Acid Formation in Rice and Defines Functional Diversification of Phytoene Synthase Genes

(2008) R. Welsch et al.   PLANT PHYSIOLOGY

PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis

(2008) J. Moon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interaction of the Arabidopsis UV-B-Specific Signaling Component UVR8 with Chromatin

(2007) Catherine Cloix et al.   Molecular Plant

PSY3, a New Member of the Phytoene Synthase Gene Family Conserved in the Poaceae and Regulator of Abiotic Stress-Induced Root Carotenogenesis

(2007) F. Li et al.   PLANT PHYSIOLOGY