Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

The diverse and expanding role of mass spectrometry in structural and molecular biology

(2016) Philip Lössl et al.   EMBO JOURNAL

An Intrinsically Disordered APLF Links Ku, DNA-PKcs, and XRCC4-DNA Ligase IV in an Extended Flexible Non-homologous End Joining Complex

(2016) Michal Hammel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles

(2016) Dina Schneidman-Duhovny et al.   NUCLEIC ACIDS RESEARCH

Blind testing of cross-linking/mass spectrometry hybrid methods in CASP11

(2016) Michael Schneider et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

(2016) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor

(2016) Chris A. Brosey et al.   STRUCTURE

Blind Evaluation of Hybrid Protein Structure Analysis Methods based on Cross-Linking

(2016) Adam Belsom et al.   TRENDS IN BIOCHEMICAL SCIENCES

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

(2016) Alexander Leitner et al.   TRENDS IN BIOCHEMICAL SCIENCES

Bacterial flagellar capping proteins adopt diverse oligomeric states

(2016) Sandra Postel et al.   eLife

Designing and defining dynamic protein cage nanoassemblies in solution

(2016) Y.-T. Lai et al.   Science Advances

HU multimerization shift controls nucleoid compaction

(2016) M. Hammel et al.   Science Advances

The C-terminal Domain (CTD) of Human DNA Glycosylase NEIL1 Is Required for Forming BERosome Repair Complex with DNA Replication Proteins at the Replicating Genome

(2015) Pavana M. Hegde et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Study into the Collision-induced Dissociation (CID) Behavior of Cross-Linked Peptides

(2015) Sven H. Giese et al.   MOLECULAR & CELLULAR PROTEOMICS

Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

(2015) Adam Belsom et al.   MOLECULAR & CELLULAR PROTEOMICS

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution

(2015) Xiaojun Xu et al.   Computational and Structural Biotechnology Journal

The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures

(2014) James M. Holton et al.   FEBS Journal

Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes

(2014) A. J. Pratt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Super-Resolution in Solution X-Ray Scattering and Its Applications to Structural Systems Biology

(2013) Robert P. Rambo et al.   Annual Review of Biophysics

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

(2013) Dina Schneidman-Duhovny et al.   BIOPHYSICAL JOURNAL

Accurate assessment of mass, models and resolution by small-angle scattering

(2013) Robert P. Rambo et al.   NATURE

Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

(2013) Greg L Hura et al.   NATURE METHODS

Integrative Structural Biology

(2013) A. B. Ward et al.   SCIENCE

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

(2012) Thomas Walzthoeni et al.   NATURE METHODS

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

(2012) K. Lasker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative structural modeling with small angle X-ray scattering profiles

(2012) Dina Schneidman-Duhovny et al.   BMC STRUCTURAL BIOLOGY

Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law

(2011) Robert P. Rambo et al.   BIOPOLYMERS

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Software for the high-throughput collection of SAXS data using an enhancedBlu-Ice/DCScontrol system

(2010) Scott Classen et al.   JOURNAL OF SYNCHROTRON RADIATION

FoXS: a web server for rapid computation and fitting of SAXS profiles

(2010) D. Schneidman-Duhovny et al.   NUCLEIC ACIDS RESEARCH

Structure and flexibility within proteins as identified through small angle X-ray scattering

(2009) M. Pelikan et al.   GENERAL PHYSIOLOGY AND BIOPHYSICS

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

(2009) Greg L Hura et al.   NATURE METHODS

Structural Mechanism of Abscisic Acid Binding and Signaling by Dimeric PYR1

(2009) N. Nishimura et al.   SCIENCE

The Protein Folding Problem

(2008) Ken A. Dill et al.   Annual Review of Biophysics

Integration of Small-Angle X-Ray Scattering Data into Structural Modeling of Proteins and Their Assemblies

(2008) Friedrich Förster et al.   JOURNAL OF MOLECULAR BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY