Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of Spirodela
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Title
Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of Spirodela
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 116, Issue 38, Pages 18893-18899
Publisher
Proceedings of the National Academy of Sciences
Online
2019-09-05
DOI
10.1073/pnas.1910401116
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- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
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