De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis

Sphingolipid-mediated calcium signaling and its pathological effects

(2018) Ilari Pulli et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Exploiting algal mineralization for nanotechnology: bringing coccoliths to the fore

(2018) Alastair W Skeffington et al.   CURRENT OPINION IN BIOTECHNOLOGY

A SLC4 family bicarbonate transporter is critical for intracellular pH regulation and biomineralization in sea urchin embryos

(2018) Marian Y Hu et al.   eLife

Calcium-related genes associated with intracellular calcification of Emiliania huxleyi (Haptophyta) CCMP 371

(2018) Onyou Nam et al.   ALGAE

Overexpression of Tisochrysis lutea Akd1 identifies a key cold-induced alkenone desaturase enzyme

(2018) Hirotoshi Endo et al.   Scientific Reports

Biogenic calcite particles from microalgae-Coccoliths as a potential raw material

(2017) Ioanna Jakob et al.   ENGINEERING IN LIFE SCIENCES

A vacuole-like compartment concentrates a disordered calcium phase in a key coccolithophorid alga

(2016) Sanja Sviben et al.   Nature Communications

Stable Nuclear Transformation System for the Coccolithophorid Alga Pleurochrysis carterae

(2016) Hirotoshi Endo et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Salinity dependent hydrogen isotope fractionation in alkenones produced by coastal and open ocean haptophyte algae

(2014) Daniela M’boule et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Translational Control during Endoplasmic Reticulum Stress beyond Phosphorylation of the Translation Initiation Factor eIF2α

(2014) Bo-Jhih Guan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

Diversity in the origins of proteostasis networks — a driver for protein function in evolution

(2013) Evan T. Powers et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dissecting the impact of CO2and pH on the mechanisms of photosynthesis and calcification in the coccolithophoreEmiliania huxleyi

(2013) Lennart T. Bach et al.   NEW PHYTOLOGIST

Emiliania huxleyi increases calcification but not expression of calcification-related genes in long-term exposure to elevated temperature and pCO2

(2013) I. Benner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PERK‐eIF2α‐ATF4‐CHOP Signaling Contributes to TNFα‐Induced Vascular Calcification

(2013) Masashi Masuda et al.   Journal of the American Heart Association

The yeast vacuolar ABC transporter Ybt1p regulates membrane fusion through Ca2+transport modulation

(2012) Terry L. Sasser et al.   BIOCHEMICAL JOURNAL

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Ocean Acidification Affects Redox-Balance and Ion-Homeostasis in the Life-Cycle Stages of Emiliania huxleyi

(2012) Sebastian D. Rokitta et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Expression of biomineralization-related ion transport genes in Emiliania huxleyi

(2011) Luke Mackinder et al.   ENVIRONMENTAL MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Characterization of the Selenite Uptake Mechanism in the Coccolithophore Emiliania huxleyi (Haptophyta)

(2011) H. Araie et al.   PLANT AND CELL PHYSIOLOGY

Vacuolar Import of Phosphatidylcholine Requires the ATP-Binding Cassette Transporter Ybt1

(2011) Kailash Gulshan et al.   TRAFFIC

Response of the calcifying coccolithophore Emiliania huxleyi to low pH/high pCO2: from physiology to molecular level

(2010) Sophie Richier et al.   MARINE BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

NO MECHANISTIC DEPENDENCE OF PHOTOSYNTHESIS ON CALCIFICATION IN THE COCCOLITHOPHORIDEMILIANIA HUXLEYI(HAPTOPHYTA)

(2009) Nikos Leonardos et al.   JOURNAL OF PHYCOLOGY

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

(2009) Peter von Dassow et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY