Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA

Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae

(2019) Zhaolian Lu et al.   GENOME RESEARCH

Identification of the m6Am Methyltransferase PCIF1 Reveals the Location and Functions of m6Am in the Transcriptome

(2019) Konstantinos Boulias et al.   MOLECULAR CELL

PCIF1 Catalyzes m6Am mRNA Methylation to Regulate Gene Expression

(2019) Erdem Sendinc et al.   MOLECULAR CELL

RIG-I and Other RNA Sensors in Antiviral Immunity

(2018) Kwan T. Chow et al.   Annual Review of Immunology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic RNA 5′-End NAD + Capping and DeNADding

(2018) Megerditch Kiledjian   TRENDS IN CELL BIOLOGY

Better together: the role of IFIT protein–protein interactions in the antiviral response

(2018) Harriet V. Mears et al.   JOURNAL OF GENERAL VIROLOGY

Differential m6A, m6Am, and m1A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm

(2018) Jiangbo Wei et al.   MOLECULAR CELL

“NAD-capQ” detection and quantitation of NAD caps

(2018) Ewa Grudzien-Nogalska et al.   RNA

Cap-specific, terminal N6-methylation by a mammalian m6Am methyltransferase

(2018) Hanxiao Sun et al.   CELL RESEARCH

Structural and molecular mechanisms for the control of eukaryotic 5′–3′ mRNA decay

(2018) Jeffrey S. Mugridge et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Cap-specific terminal N6-methylation of RNA by an RNA polymerase II–associated methyltransferase

(2018) Shinichiro Akichika et al.   SCIENCE

Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts

(2017) Xiaoyu Li et al.   MOLECULAR CELL

The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution

(2017) Modi Safra et al.   NATURE

Bacterial RNA polymerase caps RNA with various cofactors and cell wall precursors

(2017) Christina Julius et al.   NUCLEIC ACIDS RESEARCH

Dengue Virus Glycosylation: What Do We Know?

(2017) Sally S. L. Yap et al.   Frontiers in Microbiology

FANTOM5 CAGE profiles of human and mouse samples

(2017) Shuhei Noguchi et al.   Scientific Data

Label-free analysis of mRNA capping efficiency using RNase H probes and LC-MS

(2016) Michael Beverly et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Cytoplasmic RNA decay pathways - Enzymes and mechanisms

(2016) Anna Łabno et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

N6 -Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection

(2016) Nandan S. Gokhale et al.   Cell Host & Microbe

Cap-like structures in bacterial RNA and epitranscriptomic modification

(2016) Andres Jäschke et al.   CURRENT OPINION IN MICROBIOLOGY

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA

(2016) Jeremy G. Bird et al.   NATURE

The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA

(2016) Dan Dominissini et al.   NATURE

Reversible methylation of m6Am in the 5′ cap controls mRNA stability

(2016) Jan Mauer et al.   NATURE

Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome

(2016) Xiaoyu Li et al.   Nature Chemical Biology

Precursors of tRNAs are stabilized by methylguanosine cap structures

(2016) Takayuki Ohira et al.   Nature Chemical Biology

The role of sequence context, nucleotide pool balance and stress in 2′-deoxynucleotide misincorporation in viral, bacterial and mammalian RNA

(2016) Jin Wang et al.   NUCLEIC ACIDS RESEARCH

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

(2016) Marina Lizio et al.   NUCLEIC ACIDS RESEARCH

mRNA capping: biological functions and applications

(2016) Anand Ramanathan et al.   NUCLEIC ACIDS RESEARCH

Identification of NAD+capped mRNAs inSaccharomyces cerevisiae

(2016) Robert W. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of Three Magnetic Bead Surface Functionalities for RNA Extraction and Detection

(2015) Nicholas M. Adams et al.   ACS Applied Materials & Interfaces

Mass spectrometry for the assessment of the occurrence and biological consequences of DNA adducts

(2015) Shuo Liu et al.   CHEMICAL SOCIETY REVIEWS

Discovery of m7G-cap in eukaryotic mRNAs

(2015) Yasuhiro FURUICHI   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Innate immune restriction and antagonism of viral RNA lacking 2׳-O methylation

(2015) Jennifer L. Hyde et al.   VIROLOGY

The metabolic responses to hepatitis B virus infection shed new light on pathogenesis and targets for treatment

(2015) Hongde Li et al.   Scientific Reports

Gateways to the FANTOM5 promoter level mammalian expression atlas

(2015) Marina Lizio et al.   GENOME BIOLOGY

RNA methyltransferases involved in 5′ cap biosynthesis

(2015) Magdalena Byszewska et al.   RNA Biology

DNA Adductomics

(2014) Silvia Balbo et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

(2014) Ritwika S. Basu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs

(2014) Hana Cahová et al.   NATURE

Multiplicity of 5′ Cap Structures Present on Short RNAs

(2014) Rehab F. Abdelhamid et al.   PLoS One

Cytomegalovirus-mediated activation of pyrimidine biosynthesis drives UDP–sugar synthesis to support viral protein glycosylation

(2014) Stefanie Renee DeVito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GE23077 binds to the RNA polymerase ‘i’ and ‘i+1’ sites and prevents the binding of initiating nucleotides

(2014) Yu Zhang et al.   eLife

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis

(2014) Hagay Enav et al.   Microbiome

Posttranscriptional RNA Modifications: Playing Metabolic Games in a Cell’s Chemical Legoland

(2013) Mark Helm et al.   CHEMISTRY & BIOLOGY

A Mammalian Pre-mRNA 5′ End Capping Quality Control Mechanism and an Unexpected Link of Capping to Pre-mRNA Processing

(2013) Xinfu Jiao et al.   MOLECULAR CELL

2′-O Methylation of Internal Adenosine by Flavivirus NS5 Methyltransferase

(2012) Hongping Dong et al.   PLoS Pathogens

Unamplified cap analysis of gene expression on a single-molecule sequencer

(2011) M. Kanamori-Katayama et al.   GENOME RESEARCH

X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides

(2011) Michael L. Gleghorn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Multiple mRNA Decapping Enzymes in Mammalian Cells

(2010) Man-Gen Song et al.   MOLECULAR CELL

Identification of a quality-control mechanism for mRNA 5′-end capping

(2010) Xinfu Jiao et al.   NATURE

Cap and cap-binding proteins in the control of gene expression

(2010) Ivan Topisirovic et al.   Wiley Interdisciplinary Reviews-RNA

Enzymology of RNA cap synthesis

(2010) Agnidipta Ghosh et al.   Wiley Interdisciplinary Reviews-RNA

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

LC/MS analysis of cellular RNA reveals NAD-linked RNA

(2009) Y Grace Chen et al.   Nature Chemical Biology

Enzymatic analysis of uridine diphosphate N-acetyl-d -glucosamine

(2008) Seema C. Namboori et al.   ANALYTICAL BIOCHEMISTRY

Determination of the cytosolic free NAD/NADH ratio inSaccharomyces cerevisiaeunder steady-state and highly dynamic conditions

(2008) André B. Canelas et al.   BIOTECHNOLOGY AND BIOENGINEERING