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Cap-like structures in bacterial RNA and epitranscriptomic modification

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Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields

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NAD in RNA: unconventional headgear

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The primary σ factor in Escherichia coli can access the transcription elongation complex from solution in vivo

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Messenger RNA Degradation in Bacterial Cells

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Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

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NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs

(2014) Hana Cahová et al.   NATURE

An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3

(2014) Jason M. Schifano et al.   Nature Communications

Transcription Regulation at the Core: Similarities Among Bacterial, Archaeal, and Eukaryotic RNA Polymerases

(2013) Kimberly B. Decker et al.   Annual Review of Microbiology

Structural Basis of Transcription Initiation

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Features and development ofCoot

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

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A backtrack-inducing sequence is an essential component of Escherichia coli σ70-dependent promoter-proximal pausing

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LC/MS analysis of cellular RNA reveals NAD-linked RNA

(2009) Y Grace Chen et al.   Nature Chemical Biology

A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA

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The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin

(2008) Craig D. Kaplan et al.   MOLECULAR CELL

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE