NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Dual function of the McaS small RNA in controlling biofilm formation

(2013) M. G. Jorgensen et al.   GENES & DEVELOPMENT

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

Multiple Nudix family proteins possess mRNA decapping activity

(2013) M.-G. Song et al.   RNA

Substrate ambiguity among the nudix hydrolases: biologically significant, evolutionary remnant, or both?

(2012) Alexander G. McLennan   CELLULAR AND MOLECULAR LIFE SCIENCES

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

Influence of translation on RppH-dependent mRNA degradation inEscherichia coli

(2012) Jamie Richards et al.   MOLECULAR MICROBIOLOGY

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli

(2012) Mikkel Girke Jørgensen et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

GeneProf: analysis of high-throughput sequencing experiments

(2011) Florian Halbritter et al.   NATURE METHODS

The Secret Life of NAD+: An Old Metabolite Controlling New Metabolic Signaling Pathways

(2010) Riekelt H. Houtkooper et al.   ENDOCRINE REVIEWS

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P

(2010) Tatsuo Yanagisawa et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Modular architecture of nucleotide-binding pockets

(2010) Pier Federico Gherardini et al.   NUCLEIC ACIDS RESEARCH

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli

(2009) Ye Jin et al.   BMC GENOMICS

The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli

(2009) N. Tschowri et al.   GENES & DEVELOPMENT

A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response

(2009) M. M. Weber et al.   MICROBIOLOGY-SGM

Role of the sRNA GcvB in regulation of cycA in Escherichia coli

(2009) S. C. Pulvermacher et al.   MICROBIOLOGY-SGM

A conserved small RNA promotes silencing of the outer membrane protein YbfM

(2009) Anders Aamann Rasmussen et al.   MOLECULAR MICROBIOLOGY

A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system

(2009) Pierre Mandin et al.   MOLECULAR MICROBIOLOGY

A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides

(2009) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

LC/MS analysis of cellular RNA reveals NAD-linked RNA

(2009) Y Grace Chen et al.   Nature Chemical Biology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The base exchange reaction of NAD+ glycohydrolase: Identification of novel heterocyclic alternative substrates

(2008) Frank Preugschat et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior

(2008) N. De Lay et al.   JOURNAL OF BACTERIOLOGY

Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP–CRP- and σE-Dependent CyaR–ompX Regulatory Case

(2008) Jesper Johansen et al.   JOURNAL OF MOLECULAR BIOLOGY

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

(2008) Elizabeth M. Fozo et al.   MOLECULAR MICROBIOLOGY

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

(2008) Birte Reichenbach et al.   NUCLEIC ACIDS RESEARCH

Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation

(2008) Johannes H Urban et al.   PLOS BIOLOGY

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS