Rapid cell-free forward engineering of novel genetic ring oscillators

Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach

(2015) Hendrik W. H. van Roekel et al.   CHEMICAL SOCIETY REVIEWS

Quantifying cellular capacity identifies gene expression designs with reduced burden

(2015) Francesca Ceroni et al.   NATURE METHODS

Paper-Based Synthetic Gene Networks

(2014) Keith Pardee et al.   CELL

Rapid and tunable post-translational coupling of genetic circuits

(2014) Arthur Prindle et al.   NATURE

Stochasticity of metabolism and growth at the single-cell level

(2014) Daniel J. Kiviet et al.   NATURE

Programmable on-chip DNA compartments as artificial cells

(2014) E. Karzbrun et al.   SCIENCE

R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences

(2014) Arturo Casini et al.   ACS Synthetic Biology

Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems

(2014) Melissa K. Takahashi et al.   ACS Synthetic Biology

Biochemical oscillations in delayed negative cyclic feedback: Existence and profiles

(2013) Yutaka Hori et al.   AUTOMATICA

In vitro regulatory models for systems biology

(2013) Anthony J. Genot et al.   BIOTECHNOLOGY ADVANCES

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Precise and reliable gene expression via standard transcription and translation initiation elements

(2013) Vivek K Mutalik et al.   NATURE METHODS

Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology

(2013) James Chappell et al.   NUCLEIC ACIDS RESEARCH

Implementation of cell-free biological networks at steady state

(2013) H. Niederholtmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linear DNA for Rapid Prototyping of Synthetic Biological Circuits in an Escherichia coli Based TX-TL Cell-Free System

(2013) Zachary Z. Sun et al.   ACS Synthetic Biology

Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology

(2013) Zachary Z. Sun et al.   Jove-Journal of Visualized Experiments

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Existence criteria of periodic oscillations in cyclic gene regulatory networks

(2011) Yutaka Hori et al.   AUTOMATICA

Queueing up for enzymatic processing: correlated signaling through coupled degradation

(2011) N. A. Cookson et al.   Molecular Systems Biology

A sensing array of radically coupled genetic ‘biopixels’

(2011) Arthur Prindle et al.   NATURE

Expression optimization and synthetic gene networks in cell-free systems

(2011) David K. Karig et al.   NUCLEIC ACIDS RESEARCH

An E. coli Cell-Free Expression Toolbox: Application to Synthetic Gene Circuits and Artificial Cells

(2011) Jonghyeon Shin et al.   ACS Synthetic Biology

Robust Growth of Escherichia coli

(2010) Ping Wang et al.   CURRENT BIOLOGY

Five hard truths for synthetic biology

(2010) Roberta Kwok   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system

(2010) Jonghyeon Shin et al.   Journal of Biological Engineering

Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70

(2010) Jonghyeon Shin et al.   Journal of Biological Engineering

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Synthetic biology of minimal systems

(2009) Petra Schwille et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Next-generation synthetic gene networks

(2009) Timothy K Lu et al.   NATURE BIOTECHNOLOGY

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE