High‐throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification
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Title
High‐throughput proteomic analysis of
FFPE
tissue samples facilitates tumor stratification
Authors
Keywords
-
Journal
Molecular Oncology
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-09-08
DOI
10.1002/1878-0261.12570
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Note: Only part of the references are listed.- The Proteogenomic Landscape of Curable Prostate Cancer
- (2019) Ankit Sinha et al. CANCER CELL
- Parallel Proteomic Workflow for Mass Spectrometric Analysis of Tissue Samples Preserved by Different Methods
- (2018) Aleš Holfeld et al. ANALYTICAL CHEMISTRY
- Integrative proteomics in prostate cancer uncovers robustness against genomic and transcriptomic aberrations during disease progression
- (2018) Leena Latonen et al. Nature Communications
- Factors that drive the increasing use of FFPE tissue in basic and translational cancer research
- (2018) EF Gaffney et al. BIOTECHNIC & HISTOCHEMISTRY
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Residual tissue repositories as a resource for population-based cancer proteomic studies
- (2018) Paul D. Piehowski et al. Clinical Proteomics
- Identification of Protein Abundance Changes in Hepatocellular Carcinoma Tissues Using PCT-SWATH
- (2018) Yi Zhu et al. Proteomics Clinical Applications
- Quercetin Targets hnRNPA1 to Overcome Enzalutamide Resistance in Prostate Cancer Cells
- (2017) Ramakumar Tummala et al. MOLECULAR CANCER THERAPEUTICS
- Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples
- (2017) Luciano G Martelotto et al. NATURE MEDICINE
- Prognostic Role of Preoperative Serum Lipid Levels in Patients Undergoing Radical Prostatectomy for Clinically Localized Prostate Cancer
- (2017) Marian S. Wettstein et al. PROSTATE
- Proteome profiling of clear cell renal cell carcinoma in von Hippel-Lindau patients highlights upregulation of Xaa-Pro aminopeptidase-1, an anti-proliferative and anti-migratory exoprotease
- (2017) Vanessa Drendel et al. Oncotarget
- Tumor necrosis could reflect advanced disease status in patients with diffuse large B cell lymphoma treated with R-CHOP therapy
- (2016) Moo-Kon Song et al. ANNALS OF HEMATOLOGY
- T-cell defect in diffuse large B-cell lymphomas involves expansion of myeloid-derived suppressor cells
- (2016) I. Azzaoui et al. BLOOD
- The Proteome of Primary Prostate Cancer
- (2016) Diego Iglesias-Gato et al. EUROPEAN UROLOGY
- Reproducible Tissue Homogenization and Protein Extraction for Quantitative Proteomics Using MicroPestle-Assisted Pressure-Cycling Technology
- (2016) Shiying Shao et al. JOURNAL OF PROTEOME RESEARCH
- Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues
- (2016) Jacob J. Kennedy et al. JOURNAL OF PROTEOME RESEARCH
- Comparison of multiple protein extraction buffers for GeLC-MS/MS proteomic analysis of liver and colon formalin-fixed, paraffin-embedded tissues
- (2016) Valérie Broeckx et al. Molecular BioSystems
- Proteomic Analysis of Stage-II Breast Cancer from Formalin-Fixed Paraffin-Embedded Tissues
- (2016) Naif Abdullah Al-Dhabi et al. Biomed Research International
- Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research
- (2016) Christopher S. Hughes et al. Scientific Reports
- Proteomic developments in the analysis of formalin-fixed tissue
- (2015) Ove J.R. Gustafsson et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Comparison of two FFPE preparation methods using label-free shotgun proteomics: Application to tissues of diverticulitis patients
- (2015) Florence Quesada-Calvo et al. Journal of Proteomics
- Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles
- (2015) Sally J. Deeb et al. MOLECULAR & CELLULAR PROTEOMICS
- Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
- (2015) Tiannan Guo et al. NATURE MEDICINE
- Methods of integrating data to uncover genotype–phenotype interactions
- (2015) Marylyn D. Ritchie et al. NATURE REVIEWS GENETICS
- Randomized phase III study of whole-brain radiotherapy for primary CNS lymphoma
- (2015) A. Korfel et al. NEUROLOGY
- Comparison of Different Buffers for Protein Extraction from Formalin-Fixed and Paraffin-Embedded Tissue Specimens
- (2015) Kaini Shen et al. PLoS One
- Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry
- (2015) Shiying Shao et al. PROTEOMICS
- Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding
- (2015) Ying Zhang et al. PROTEOMICS
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Overexpression of Periostin in Stroma Positively Associated with Aggressive Prostate Cancer
- (2015) Yuan Tian et al. PLoS One
- Decorin Suppresses Prostate Tumor Growth through Inhibition of Epidermal Growth Factor and Androgen Receptor Pathways
- (2015) Yunping Hu et al. NEOPLASIA
- A Review of Preanalytical Factors Affecting Molecular, Protein, and Morphological Analysis of Formalin-Fixed, Paraffin-Embedded (FFPE) Tissue: How Well Do You Know Your FFPE Specimen?
- (2014) B. Paige Bass et al. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE
- Src signaling pathways in prostate cancer
- (2014) Andreas Varkaris et al. CANCER AND METASTASIS REVIEWS
- The procurement, storage, and quality assurance of frozen blood and tissue biospecimens in pathology, biorepository, and biobank settings
- (2014) Maryam Shabihkhani et al. CLINICAL BIOCHEMISTRY
- OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
- (2014) Hannes L Röst et al. NATURE BIOTECHNOLOGY
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine
- (2014) Eliezer M Van Allen et al. NATURE MEDICINE
- Causal analysis approaches in Ingenuity Pathway Analysis
- (2013) Andreas Krämer et al. BIOINFORMATICS
- Proteomic studies of formalin-fixed paraffin-embedded tissues
- (2013) Laura Giusti et al. Expert Review of Proteomics
- Inhibition of Telomerase Recruitment and Cancer Cell Death
- (2013) Mai Nakashima et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Phosphoproteome Analysis of Formalin-Fixed and Paraffin-Embedded Tissue Sections Mounted on Microscope Slides
- (2013) Masaki Wakabayashi et al. JOURNAL OF PROTEOME RESEARCH
- Spondin-2, a Secreted Extracellular Matrix Protein, is a Novel Diagnostic Biomarker for Prostate Cancer
- (2013) Giuseppe Lucarelli et al. JOURNAL OF UROLOGY
- Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies
- (2013) Shan-Rong Shi et al. Proteomics Clinical Applications
- Improved protein extraction and protein identification from archival formalin-fixed paraffin-embedded human aortas
- (2013) Zongming Fu et al. Proteomics Clinical Applications
- When Tissue Antigens and Antibodies Get Along
- (2013) J. A. Ramos-Vara et al. VETERINARY PATHOLOGY
- Prognostic value of stromal and epithelial periostin expression in human prostate cancer: correlation with clinical pathological features and the risk of biochemical relapse or death
- (2012) Pier Vitale Nuzzo et al. BMC CANCER
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma
- (2012) Jacek R Wiśniewski et al. Molecular Systems Biology
- Spondin-2 (SPON2), a More Prostate-Cancer-Specific Diagnostic Biomarker
- (2012) Xiaolong Qian et al. PLoS One
- Using iRT, a normalized retention time for more targeted measurement of peptides
- (2012) Claudia Escher et al. PROTEOMICS
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- Antigen Retrieval Immunohistochemistry
- (2011) Shan-Rong Shi et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- Proteomic Identification of Immunoproteasome Accumulation in Formalin-Fixed Rodent Spinal Cords with Experimental Autoimmune Encephalomyelitis
- (2011) Mohit Raja Jain et al. JOURNAL OF PROTEOME RESEARCH
- Ubiquitin carboxyl-terminal hydrolase 1 (UCHL1) is a potential tumour suppressor in prostate cancer and is frequently silenced by promoter methylation
- (2011) Ramesh Ummanni et al. Molecular Cancer
- Periostin is up-regulated in high grade and high stage prostate cancer
- (2010) Verena Tischler et al. BMC CANCER
- Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry
- (2010) Paweł Ostasiewicz et al. JOURNAL OF PROTEOME RESEARCH
- The anterior gradient 2 (AGR2) gene is overexpressed in prostate cancer and may be useful as a urine sediment marker for prostate cancer detection
- (2010) Huajie Bu et al. PROSTATE
- The cancer biomarker problem
- (2008) Charles L. Sawyers NATURE
- ProCOC: The prostate cancer outcomes cohort study
- (2008) Martin Umbehr et al. BMC Urology
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