Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding

Histone methylation during neural development

(2014) Deborah Roidl et al.   CELL AND TISSUE RESEARCH

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

Comparability of differential proteomics data generated from paired archival fresh-frozen and formalin-fixed samples by GeLC–MS/MS and spectral counting

(2012) Alessandro Tanca et al.   Journal of Proteomics

Application of 2D-DIGE to formalin-fixed diseased tissue samples from hospital repositories: Results from four case studies

(2012) Alessandro Tanca et al.   Proteomics Clinical Applications

Multiple Reaction Monitoring Assay for Pre-eclampsia Related Calcyclin Peptides in Formalin Fixed Paraffin Embedded Placenta

(2011) Coşkun Güzel et al.   JOURNAL OF PROTEOME RESEARCH

QuickMod: A Tool for Open Modification Spectrum Library Searches

(2011) Erik Ahrné et al.   JOURNAL OF PROTEOME RESEARCH

High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

(2011) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

(2011) Henry Lam et al.   METHODS

An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

(2011) Erik Ahrné et al.   PROTEOMICS

Accessibility governs the relative reactivity of basic residues in formaldehyde-induced protein modifications

(2010) Judy Toews et al.   ANALYTICA CHIMICA ACTA

Initial Development and Validation of a Novel Extraction Method for Quantitative Mining of the Formalin-Fixed, Paraffin-Embedded Tissue Proteome for Biomarker Investigations

(2010) Niroshini J. Nirmalan et al.   JOURNAL OF PROTEOME RESEARCH

Differential Proteomic Analysis of Late-Stage and Recurrent Breast Cancer from Formalin-Fixed Paraffin-Embedded Tissues

(2010) Nicholas W. Bateman et al.   JOURNAL OF PROTEOME RESEARCH

Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics

(2009) Henry Lam et al.   JOURNAL OF PROTEOME RESEARCH

Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

(2009) Robert W. Sprung et al.   MOLECULAR & CELLULAR PROTEOMICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Unrestricted identification of modified proteins using MS/MS

(2009) Erik Ahrné et al.   PROTEOMICS

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

(2008) Judy Toews et al.   ANALYTICA CHIMICA ACTA

Modeling formalin fixation and histological processing with ribonuclease A: effects of ethanol dehydration on reversal of formaldehyde cross-links

(2008) Carol B Fowler et al.   LABORATORY INVESTIGATION