TERAD: Extraction of transposable element composition from RADseq data

Coevolution of Genome Architecture and Social Behavior

(2019) Dustin R. Rubenstein et al.   TRENDS IN ECOLOGY & EVOLUTION

Efficiently Inferring the Demographic History of Many Populations With Allele Count Data

(2019) Jack Kamm et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Latitudinal variation in genome size in crustaceans

(2018) K M Hultgren et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Mammalian transposable elements and their impacts on genome evolution

(2018) Roy N. Platt et al.   CHROMOSOME RESEARCH

Clonal genome evolution and rapid invasive spread of the marbled crayfish

(2018) Julian Gutekunst et al.   Nature Ecology & Evolution

The axolotl genome and the evolution of key tissue formation regulators

(2018) Sergej Nowoshilow et al.   NATURE

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

(2017) Venkat Talla et al.   Genome Biology and Evolution

Less effective selection leads to larger genomes

(2017) Tristan Lefébure et al.   GENOME RESEARCH

Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae)

(2017) Emiliano Trucchi et al.   NEW PHYTOLOGIST

Evolutionary transitions towards eusociality in snapping shrimps

(2017) Solomon Tin Chi Chak et al.   Nature Ecology & Evolution

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

(2016) Camille Sessegolo et al.   Biology Letters

Patterns of genome size variation in snapping shrimp

(2016) Nicholas W. Jeffery et al.   GENOME

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Accumulation of transposable elements inHoxgene clusters during adaptive radiation ofAnolislizards

(2016) Nathalie Feiner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Draft genome of the Chinese mitten crab, Eriocheir sinensis

(2016) Linsheng Song et al.   GigaScience

UrQt: an efficient software for the Unsupervised Quality trimming of NGS data

(2015) Laurent Modolo et al.   BMC BIOINFORMATICS

Do larger genomes contain more diverse transposable elements?

(2015) Tyler A Elliott et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

(2015) S. Evan Staton et al.   BMC GENOMICS

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

Predicting RAD-seq Marker Numbers across the Eukaryotic Tree of Life

(2015) Santiago Herrera et al.   Genome Biology and Evolution

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

(2015) Clément Goubert et al.   Genome Biology and Evolution

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata

(2014) Nathan Kenny et al.   Marine Drugs

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Independent Contrasts and PGLS Regression Estimators Are Equivalent

(2012) Simon P. Blomberg et al.   SYSTEMATIC BIOLOGY

Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?

(2011) J. Arvid Ågren et al.   CHROMOSOME RESEARCH

A guided tour of large genome size in animals: what we know and where we are heading

(2011) France Dufresne et al.   CHROMOSOME RESEARCH

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

(2009) David A Rasmussen et al.   BMC GENOMICS

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

(2008) Thomas Wicker et al.   BMC GENOMICS