Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake

Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity

(2019) Stilianos Fodelianakis et al.   Nature Communications

Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem

(2018) Dorota L. Porazinska et al.   ECOLOGY

Contrasting patterns of the bacterial and archaeal communities in a high-elevation river in northwestern China

(2018) Yang Hu et al.   JOURNAL OF MICROBIOLOGY

Microbial community assembly differs across minerals in a rhizosphere microcosm

(2018) Thea Whitman et al.   ENVIRONMENTAL MICROBIOLOGY

Patterns of root colonization by arbuscular mycorrhizal fungi and dark septate endophytes across a mostly-unvegetated, high-elevation landscape

(2018) Clifton P. Bueno de Mesquita et al.   Fungal Ecology

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Prokaryotic Community Structure Driven by Salinity and Ionic Concentrations in Plateau Lakes of the Tibetan Plateau

(2016) Zhi-Ping Zhong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Climate regulates alpine lake ice cover phenology and aquatic ecosystem structure

(2016) Daniel L. Preston et al.   GEOPHYSICAL RESEARCH LETTERS

Terrestrial origin of bacterial communities in complex boreal freshwater networks

(2015) Clara Ruiz-González et al.   ECOLOGY LETTERS

The ‘teflon basin’ myth: hydrology and hydrochemistry of a seasonally snow-covered catchment

(2015) Mark W. Williams et al.   Plant Ecology & Diversity

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

High Genetic Diversity and Novelty in Eukaryotic Plankton Assemblages Inhabiting Saline Lakes in the Qaidam Basin

(2014) Jiali Wang et al.   PLoS One

Viewing forests through the lens of complex systems science

(2014) Elise Filotas et al.   Ecosphere

Metacommunity dynamics of bacteria in an arctic lake: the impact of species sorting and mass effects on bacterial production and biogeography

(2014) Heather E. Adams et al.   Frontiers in Microbiology

Thawing glacial and permafrost features contribute to nitrogen export from Green Lakes Valley, Colorado Front Range, USA

(2013) Rebecca T. Barnes et al.   BIOGEOCHEMISTRY

Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios

(2013) Maria Vila-Costa et al.   FEMS MICROBIOLOGY ECOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Hydrurus-related golden algae (Chrysophyceae) cause yellow snow in polar summer snowfields

(2013) Daniel Remias et al.   PHYCOLOGICAL RESEARCH

Environment drives high phylogenetic turnover among oceanic bacterial communities

(2012) T. Pommier et al.   Biology Letters

Ecological determinism increases with organism size

(2012) Vinicius F. Farjalla et al.   ECOLOGY

Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams

(2012) Lee F. Stanish et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain)

(2012) Xavier Triadó-Margarit et al.   ENVIRONMENTAL MICROBIOLOGY

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal Dynamics of the Bacterial Community in Lake Namco, the Largest Tibetan Lake

(2012) Yongqin Liu et al.   GEOMICROBIOLOGY JOURNAL

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Limnology of the Green Lakes Valley: phytoplankton ecology and dissolved organic matter biogeochemistry at a long-term ecological research site

(2012) Matthew P. Miller et al.   Plant Ecology & Diversity

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

(2012) Sari Peura et al.   PLoS One

Long-term changes in oxygen depletion in a small temperate lake: effects of climate change and eutrophication

(2011) BRIAN FOLEY et al.   FRESHWATER BIOLOGY

Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species–area relationships

(2011) Jürg Brendan Logue et al.   ISME Journal

Contrasting the influences of stream inputs and landscape position on bacterioplankton community structure and dissolved organic matter composition in high-elevation lake chains

(2011) Craig E. Nelson et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Recent hydrologic change in a Colorado alpine basin: an indicator of permafrost thaw?

(2011) Nel Caine   ANNALS OF GLACIOLOGY

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Linkage between crustacean zooplankton and aquatic bacteria

(2010) KW Tang et al.   AQUATIC MICROBIAL ECOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Comparison of seasonal changes in fluorescent dissolved organic matter among aquatic lake and stream sites in the Green Lakes Valley

(2010) Matthew P. Miller et al.   JOURNAL OF GEOPHYSICAL RESEARCH

The interplay between bacterial community composition and the environment determining function of inland water bacteria

(2010) Eva S. Lindström et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Biogeography and habitat modelling of high-alpine bacteria

(2010) Andrew J. King et al.   Nature Communications

Response of the Phytoplankton Community in an Alpine Lake to Drought Conditions: Colorado Rocky Mountain Front Range, U.S.A

(2009) Colleen M. Flanagan et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

Soil CO2flux and photoautotrophic community composition in high-elevation, ‘barren’ soil

(2009) Kristen R. Freeman et al.   ENVIRONMENTAL MICROBIOLOGY

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Effects of Nutrient Enrichment on Phytoplankton in an Alpine Lake, Colorado, U.S.A

(2008) Eileen M. Gardner et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake

(2008) Hans-Peter Grossart et al.   ENVIRONMENTAL MICROBIOLOGY

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

(2008) Hege Vestheim et al.   Frontiers in Zoology

The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton

(2008) Emilie Lefèvre et al.   PLoS One

Estimating stream chemistry during the snowmelt pulse using a spatially distributed, coupled snowmelt and hydrochemical modeling approach

(2008) Noah P. Molotch et al.   WATER RESOURCES RESEARCH