Event extraction across multiple levels of biological organization

BioNLP Shared Task - The Bacteria Track

(2013) Robert Bossy et al.   BMC BIOINFORMATICS

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

(2012) M. Miwa et al.   BIOINFORMATICS

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

(2012) Sampo Pyysalo et al.   BMC BIOINFORMATICS

Modeling biomedical experimental processes with OBI

(2012) Ryan R Brinkman et al.   Journal of Biomedical Semantics

Automatic extraction of angiogenesis bioprocess from text

(2011) X. Wang et al.   BIOINFORMATICS

EXTRACTING BIO-MOLECULAR EVENTS FROM LITERATURE-THE BIONLP’09 SHARED TASK

(2011) Jin-Dong Kim et al.   COMPUTATIONAL INTELLIGENCE

Event extraction for DNA methylation

(2011) Tomoko Ohta et al.   Journal of Biomedical Semantics

Complex event extraction at PubMed scale

(2010) J. Bjorne et al.   BIOINFORMATICS

Desiderata for ontologies to be used in semantic annotation of biomedical documents

(2010) Michael Bada et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Cross-product extensions of the Gene Ontology

(2010) Christopher J. Mungall et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

Evaluating contributions of natural language parsers to protein-protein interaction extraction

(2008) Y. Miyao et al.   BIOINFORMATICS

Corpus annotation for mining biomedical events from literature

(2008) Jin-Dong Kim et al.   BMC BIOINFORMATICS