Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing

(2011) Todd A. Castoe et al.   Genome Biology and Evolution

Reading TE leaves: New approaches to the identification of transposable element insertions

(2011) D. A. Ray et al.   GENOME RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

(2009) Cédric Feschotte et al.   Genome Biology and Evolution

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs

(2009) E Lerat   HEREDITY

Identification of repeat structure in large genomes using repeat probability clouds

(2008) Wanjun Gu et al.   ANALYTICAL BIOCHEMISTRY

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

(2007) G. Lunter et al.   GENOME RESEARCH