The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea)

(2017) Şurhan Göl et al.   MOLECULAR GENETICS AND GENOMICS

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

(2017) Petr Novák et al.   NUCLEIC ACIDS RESEARCH

Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions

(2017) Chenxi Xu et al.   Nature Communications

Regulation of rice root development by a retrotransposon acting as a microRNA sponge

(2017) Jungnam Cho et al.   eLife

Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants

(2017) Shu-Fen Li et al.   Genes

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

(2016) Camille Sessegolo et al.   Biology Letters

Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies

(2016) Roy N. Platt et al.   Genome Biology and Evolution

Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes

(2016) Shu-Fen Li et al.   PLANTA

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus

(2016) Alex Harkess et al.   G3-Genes Genomes Genetics

Origin and domestication of papaya Yhchromosome

(2015) Robert VanBuren et al.   GENOME RESEARCH

Plant contributions to our understanding of sex chromosome evolution

(2015) Deborah Charlesworth   NEW PHYTOLOGIST

Short-term hybridisation activates Tnt1 and Tto1 Copia retrotransposons in wild tuber-bearingSolanumspecies

(2015) R. C. Paz et al.   PLANT BIOLOGY

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

(2014) E. Barghini et al.   DNA RESEARCH

The genome sequence of the orchid Phalaenopsis equestris

(2014) Jing Cai et al.   NATURE GENETICS

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome

(2014) Zdenek Kubat et al.   NEW PHYTOLOGIST

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes

(2014) W. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes

(2013) C. Vitte et al.   ANNALS OF BOTANY

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

HTQC: a fast quality control toolkit for Illumina sequencing data

(2013) Xi Yang et al.   BMC BIOINFORMATICS

Identification of sex chromosome of spinach by physical mapping of 45s rDNAs by FISH

(2013) Chuanliang Deng et al.   CARYOLOGIA

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

(2013) Rajinder Singh et al.   NATURE

Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution

(2012) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia(Cucurbitaceae)

(2011) Norbert Holstein et al.   BMC EVOLUTIONARY BIOLOGY

A satellite DNA evolutionary analysis in the North American endemic dioecious plant Rumex hastatulus (Polygonaceae)

(2011) M.E. Quesada del Bosque et al.   GENOME

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Analysis of plant diversity with retrotransposon-based molecular markers

(2010) R Kalendar et al.   HEREDITY

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs

(2009) E Lerat   HEREDITY

The role of repetitive DNA in structure and evolution of sex chromosomes in plants

(2009) E Kejnovsky et al.   HEREDITY

A transposon-induced epigenetic change leads to sex determination in melon

(2009) Antoine Martin et al.   NATURE

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes

(2009) M. Rho et al.   NUCLEIC ACIDS RESEARCH

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Epigenetic Regulation of Transposable Elements in Plants

(2008) Damon Lisch   Annual Review of Plant Biology

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes

(2008) Tomas Cermak et al.   CHROMOSOME RESEARCH

Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat

(2008) M. Charles et al.   GENETICS

Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome

(2008) R B Spigler et al.   HEREDITY

Recent Origin of Dioecious and Gynodioecious Y Chromosomes in Papaya

(2008) Qingyi Yu et al.   Tropical Plant Biology