Lignocellulose degradation in isopods: new insights into the adaptation to terrestrial life

Multiplicity of enzymatic functions in the CAZy AA3 family

(2018) Leander Sützl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

cDNA sequences of GHF9 endo-β-1,4-glucanases in terrestrial Crustacea

(2018) Michael Gray et al.   GENE

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

(2018) Steven Weaver et al.   MOLECULAR BIOLOGY AND EVOLUTION

An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

(2018) Federico Sabbadin et al.   Nature Communications

The hologenome concept of evolution after 10 years

(2018) Eugene Rosenberg et al.   Microbiome

Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate

(2018) Marius Bredon et al.   Microbiome

Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

(2018) Katrin Besser et al.   Nature Communications

De novo assembly, characterization and annotation for the transcriptome of Sphaeroma terebrans and microsatellite marker discovery

(2017) Chong Han et al.   Genes & Genomics

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

An evolutionary timescale for terrestrial isopods and a lack of molecular support for the monophyly of Oniscidea (Crustacea: Isopoda)

(2017) Luana S. F. Lins et al.   ORGANISMS DIVERSITY & EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion

(2016) Damian Kao et al.   eLife

The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance

(2016) Didier Bouchon et al.   Frontiers in Microbiology

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

(2016) Rubén López-Mondéjar et al.   Scientific Reports

Insight into the indirect function of isopods in litter decomposition in mixed subtropical forests in China

(2015) Yanyan Jia et al.   APPLIED SOIL ECOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Lignocellulose degradation mechanisms across the Tree of Life

(2015) Simon M Cragg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Gene-Wide Identification of Episodic Selection

(2015) Ben Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase

(2015) Mun Hua Tan et al.   ORGANISMS DIVERSITY & EVOLUTION

The role of Armadillidium vulgare (Isopoda: Oniscidea) in litter decomposition and soil organic matter stabilization

(2014) Alexandra Špaldoňová et al.   APPLIED SOIL ECOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

(2014) Panagiotis Ioannidis et al.   BMC GENOMICS

Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes

(2014) Johanna Rytioja et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Symbiotic digestion of lignocellulose in termite guts

(2014) Andreas Brune   NATURE REVIEWS MICROBIOLOGY

Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica virgifera virgifera)

(2014) Seong-il Eyun et al.   PLoS One

The role of litter-feeding macroarthropods in decomposition processes: A reappraisal of common views

(2014) J.F. David   SOIL BIOLOGY & BIOCHEMISTRY

Lignocellulose-degrading enzymes from termites and their symbiotic microbiota

(2013) Jinfeng Ni et al.   BIOTECHNOLOGY ADVANCES

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis

(2013) Filip Husnik et al.   CELL

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

(2013) Erin D. Scully et al.   PLoS One

Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

(2013) M. Kern et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Bacterial Community Associated with Larvae and Adults ofAnoplophora chinensisCollected in Italy by Culture and Culture-Independent Methods

(2013) Aurora Rizzi et al.   Biomed Research International

Strategies for the production of high concentrations of bioethanol from seaweeds

(2013) Mitsunori Yanagisawa et al.   Bioengineered

The origin of terrestrial isopods (Crustacea: Isopoda: Oniscidea)

(2012) Pierre Broly et al.   EVOLUTIONARY ECOLOGY

Expansion of the silkworm GMC oxidoreductase genes is associated with immunity

(2012) Wei Sun et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee

(2012) R. Acuna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover

(2011) Werner E Mayer et al.   BMC EVOLUTIONARY BIOLOGY

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Endogenous origin of endo-β-1,4-glucanase in common woodlouse Porcellio scaber (Crustacea, Isopoda)

(2010) Rok Kostanjšek et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes

(2010) A. J. King et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA