RNAi based transcriptome suggests genes potentially regulated by HSF1 in the Pacific oyster Crassostrea gigas under thermal stress

The transcriptional response of the Pacific oyster Crassostrea gigas under simultaneous bacterial and heat stresses

(2019) Huan Zhang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Analysis of farm management strategies following herpesvirus (OsHV-1) disease outbreaks in Pacific oysters in Tasmania, Australia

(2018) Sarah C. Ugalde et al.   AQUACULTURE

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

Regulation of the mammalian heat shock factor 1

(2017) Sharadha Dayalan Naidu et al.   FEBS Journal

Bio-effect-monitoring of long-term thermal wastes on the oyster, Crassostrea gigas , using heat shock proteins

(2017) Jin-Hyoung Kim et al.   MARINE POLLUTION BULLETIN

Transcriptome response of the Pacific oyster, Crassostrea gigas susceptible to thermal stress: A comparison with the response of tolerant oyster

(2017) Bo-Mi Kim et al.   Molecular & Cellular Toxicology

Regulation of heat shock transcription factors and their roles in physiology and disease

(2017) Rocio Gomez-Pastor et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Temperature, energy metabolism, and adaptive divergence in two oyster subspecies

(2017) Ao Li et al.   Ecology and Evolution

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

(2016) Jessica Brunquell et al.   BMC GENOMICS

Thermal stress induces a distinct transcriptome profile in the Pacific oyster Crassostrea gigas

(2016) Hyun-Jeong Lim et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Hsp70 gene expansions in the scallop Patinopecten yessoensis and their expression regulation after exposure to the toxic dinoflagellate Alexandrium catenella

(2016) Jie Cheng et al.   FISH & SHELLFISH IMMUNOLOGY

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas

(2016) Qihui Zhu et al.   MARINE BIOTECHNOLOGY

Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation

(2016) Dig B. Mahat et al.   MOLECULAR CELL

Characterization of CgHIFα-Like, a Novel bHLH-PAS Transcription Factor Family Member, and Its Role under Hypoxia Stress in the Pacific Oyster Crassostrea gigas

(2016) Ting Wang et al.   PLoS One

Molecular Basis for Adaptation of Oysters to Stressful Marine Intertidal Environments

(2016) Guofan Zhang et al.   Annual Review of Animal Biosciences

Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle

(2016) Takeshi Takeuchi et al.   Zoological Letters

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing

(2015) Denghui Xing et al.   PLANT CELL

An artificial HSE promoter for efficient and selective detection of heat shock pathway activity

(2014) Viktoria Ortner et al.   CELL STRESS & CHAPERONES

Proteomic Basis of Stress Responses in the Gills of the Pacific Oyster Crassostrea gigas

(2014) Yang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics to study adaptations in marine organisms to environmental stress

(2014) Lars Tomanek   Journal of Proteomics

Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

(2014) Marcela Uliano-Silva et al.   PLoS One

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock

(2012) Lingling Zhang et al.   PLoS One

Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish

(2012) G. R. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel isoforms of heat shock transcription factor 1 are induced by hypoxia in the Pacific oyster Crassostrea gigas

(2011) Shinya Kawabe et al.   Journal of Experimental Zoology Part A-Ecological Genetics and Physiology

In Vivo RNA Interference of a Gonad-Specific Transforming Growth Factor-β in the Pacific Oyster Crassostrea gigas

(2011) Arnaud Huvet et al.   MARINE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Oxygen- and capacity-limitation of thermal tolerance: a matrix for integrating climate-related stressor effects in marine ecosystems

(2010) H.-O. Portner   JOURNAL OF EXPERIMENTAL BIOLOGY

Phylogeny Disambiguates the Evolution of Heat-Shock cis-Regulatory Elements in Drosophila

(2010) Sibo Tian et al.   PLoS One

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Anesthesia in Pacific oyster,Crassostrea gigas

(2009) Marc Suquet et al.   AQUATIC LIVING RESOURCES

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

In vivoRNA interference in oyster -vasasilencing inhibits germ cell development

(2009) Caroline Fabioux et al.   FEBS Journal

Transcriptome Profiling of Selectively Bred Pacific Oyster Crassostrea gigas Families that Differ in Tolerance of Heat Shock

(2009) R. Paul Lang et al.   MARINE BIOTECHNOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE