Evaluation of DESS as a storage medium for microbial community analysis

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

(2017) Luisa W. Hugerth et al.   Frontiers in Microbiology

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

(2017) Amnon Amir et al.   mSystems

Comparison of Collection Methods for Fecal Samples in Microbiome Studies

(2016) Emily Vogtmann et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Effects of field conditions on fecal microbiota

(2016) Vanessa L. Hale et al.   JOURNAL OF MICROBIOLOGICAL METHODS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome

(2016) Ericka L. Anderson et al.   Scientific Reports

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data

(2016) Ran Blekhman et al.   Scientific Reports

Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants

(2016) Cian J. Hill et al.   Microbiome

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

Integrity of the Human Faecal Microbiota following Long-Term Sample Storage

(2016) Elahe Kia et al.   PLoS One

Sample storage conditions significantly influence faecal microbiome profiles

(2015) Jocelyn M Choo et al.   Scientific Reports

Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool

(2015) Monika A. Gorzelak et al.   PLoS One

Effect of preservation method on the assessment of bacterial community structure in soil and water samples

(2014) Valeria Tatangelo et al.   FEMS MICROBIOLOGY LETTERS

Optimized Cryopreservation of Mixed Microbial Communities for Conserved Functionality and Diversity

(2014) Frederiek-Maarten Kerckhof et al.   PLoS One

Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects

(2014) Frank O. Aylward et al.   mBio

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Storage conditions of intestinal microbiota matter in metagenomic analysis

(2012) Silvia Cardona et al.   BMC MICROBIOLOGY

Comparison of DNA preservation methods for environmental bacterial community samples

(2012) Michael A. Gray et al.   FEMS MICROBIOLOGY ECOLOGY

Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis

(2012) Martin Iain Bahl et al.   FEMS MICROBIOLOGY LETTERS

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

(2012) Frank O Aylward et al.   ISME Journal

Evaluation of different storage methods to characterize the fecal bacterial communities of captive western lowland gorillas (Gorilla gorilla gorilla)

(2012) Klára Vlčková et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comparison of Storage Conditions for Human Vaginal Microbiome Studies

(2012) Guoyun Bai et al.   PLoS One

Microbiomes of ant castes implicate new microbial roles in the fungus-growing ant Trachymyrmex septentrionalis

(2011) Heather D. Ishak et al.   Scientific Reports

Storage of environmental samples for guaranteeing nucleic acid yields for molecular microbiological studies

(2010) Antti Juhani Rissanen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments

(2010) M. R. Gaither et al.   CORAL REEFS

Forage collection, substrate preparation, and diet composition in fungus-growing ants

(2010) HENRIK H. DE FINE LICHT et al.   ECOLOGICAL ENTOMOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimizing the indirect extraction of prokaryotic DNA from soils

(2010) Kurt. E. Williamson et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

(2010) Garret Suen et al.   PLoS Genetics