Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake
出版年份 2019 全文链接
标题
Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake
作者
关键词
Soda lake, Haloalkaliphiles, Metagenomics, Metatranscriptomics, Thiosulfate, Tetrathionate, Polysulfide, <em class="EmphasisTypeItalic ">Woesearchaeota</em>, <em class="EmphasisTypeItalic ">Gemmatimonadetes</em>, Nitrogen fixation
出版物
BMC BIOLOGY
Volume 17, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-08-22
DOI
10.1186/s12915-019-0688-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evaluation of DESS as a storage medium for microbial community analysis
- (2019) Kevin M. Lee et al. PeerJ
- Effect of salinity on diazotrophic activity and microbial composition of phototrophic communities from Bitter-1 soda lake (Kulunda Steppe, Russia)
- (2018) Zorigto Namsaraev et al. EXTREMOPHILES
- A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds
- (2018) Tobias Koch et al. ISME Journal
- Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
- (2018) Karthik Anantharaman et al. ISME Journal
- A second RNA-binding protein is essential for ethanol tolerance provided by the bacterial OLE ribonucleoprotein complex
- (2018) Kimberly A. Harris et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
- (2018) Xiaobo Liu et al. Microbiome
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
- (2018) Charlotte D. Vavourakis et al. Microbiome
- Sulfur Respiration in a Group of Facultatively Anaerobic Natronoarchaea Ubiquitous in Hypersaline Soda Lakes
- (2018) Dimitry Y. Sorokin et al. Frontiers in Microbiology
- Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments
- (2018) Peer H. A. Timmers et al. Frontiers in Microbiology
- Genomic Analysis of the Evolution of Phototrophy among Haloalkaliphilic Rhodobacterales
- (2017) Karel Kopejtka et al. Genome Biology and Evolution
- An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira
- (2017) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Nitrincola alkalilacustris sp. nov. and Nitrincola schmidtii sp. nov., alkaliphilic bacteria isolated from soda pans, and emended description of the genus Nitrincola
- (2017) Andrea K. Borsodi et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA
- (2017) Christian F Edwardson et al. ISME Journal
- Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents
- (2017) Dimitri V Meier et al. ISME Journal
- Superhydrophobic diving flies (Ephydra hians) and the hypersaline waters of Mono Lake
- (2017) Floris van Breugel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The life sulfuric: microbial ecology of sulfur cycling in marine sediments
- (2017) Kenneth Wasmund et al. Environmental Microbiology Reports
- Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate
- (2017) Casper Thorup et al. mBio
- Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica
- (2017) Marko Dachev et al. PLOS BIOLOGY
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes
- (2016) Emily Denise Melton et al. Standards in Genomic Sciences
- Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
- (2016) Charlotte D. Vavourakis et al. Frontiers in Microbiology
- Nitrogen fixation in a chemoautotrophic lucinid symbiosis
- (2016) Sten König et al. Nature Microbiology
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Functional microbiology of soda lakes
- (2015) Dimitry Y Sorokin et al. CURRENT OPINION IN MICROBIOLOGY
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Thiosulfate Dehydrogenase (TsdA) fromAllochromatium vinosum
- (2015) José A. Brito et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome
- (2015) Vímac Nolla-Ardèvol et al. Frontiers in Microbiology
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- Microbial diversity and biogeochemical cycling in soda lakes
- (2014) Dimitry Y. Sorokin et al. EXTREMOPHILES
- Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases
- (2014) Albert Leopold Müller et al. ISME Journal
- Algo-bacterial communities of the Kulunda steppe (Altai Region, Russia) Soda Lakes
- (2014) O. S. Samylina et al. MICROBIOLOGY
- Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes
- (2014) Y. Zeng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Disproportionation of elemental sulfur by haloalkaliphilic bacteria from soda lakes
- (2013) Alexander Poser et al. EXTREMOPHILES
- Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi
- (2013) Kenneth Wasmund et al. ISME Journal
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- Thiosulfate dehydrogenase: a widespread unusual acidophilicc-type cytochrome
- (2012) Kevin Denkmann et al. ENVIRONMENTAL MICROBIOLOGY
- Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes usingsoxB as a functional molecular marker
- (2012) Tatjana P. Tourova et al. FEMS MICROBIOLOGY ECOLOGY
- Identification and characterization of a bacterial hydrosulphide ion channel
- (2012) Bryan K. Czyzewski et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Microfossils of sulphur-metabolizing cells in 3.4-billion-year-old rocks of Western Australia
- (2011) David Wacey et al. Nature Geoscience
- A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea
- (2011) Inês A. Cardoso Pereira et al. Frontiers in Microbiology
- The Microbial Sulfur Cycle at Extremely Haloalkaline Conditions of Soda Lakes
- (2011) Dimitry Y. Sorokin et al. Frontiers in Microbiology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Sulfidogenesis under extremely haloalkaline conditions in soda lakes of Kulunda Steppe (Altai, Russia)
- (2010) Dimitry Y. Sorokin et al. FEMS MICROBIOLOGY ECOLOGY
- Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2
- (2009) J. L. Burns et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Structural and Functional Insights into Sulfide:Quinone Oxidoreductase,
- (2009) José A. Brito et al. BIOCHEMISTRY
- Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs
- (2009) E. Chernousova et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Nitriliruptor alkaliphilus gen. nov., sp. nov., a deep-lineage haloalkaliphilic actinobacterium from soda lakes capable of growth on aliphatic nitriles, and proposal of Nitriliruptoraceae fam. nov. and Nitriliruptorales ord. nov.
- (2009) D. Yu. Sorokin et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Hydrothermal vents and the origin of life
- (2008) William Martin et al. NATURE REVIEWS MICROBIOLOGY
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