Shifting Climates, Foods, and Diseases: The Human Microbiome through Evolution

The neuroactive potential of the human gut microbiota in quality of life and depression

(2019) Mireia Valles-Colomer et al.   Nature Microbiology

Human Immunology through the Lens of Evolutionary Genetics

(2019) Lluis Quintana-Murci   CELL

Multidisciplinarity in Microbiome Research: A Challenge and Opportunity to Rethink Causation, Variability, and Scale

(2019) Katherine R. Amato et al.   BIOESSAYS

The microbial reproductive ecology of white-faced capuchins (Cebus capucinus )

(2018) Elizabeth K. Mallott et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Ancient Human Genomics: The First Decade

(2018) Pontus Skoglund et al.   Annual Review of Genomics and Human Genetics

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

(2018) Katherine R. Amato et al.   ISME Journal

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

How the microbiome challenges our concept of self

(2018) Tobias Rees et al.   PLOS BIOLOGY

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

(2018) Niv Zmora et al.   CELL

You are what you eat: diet, health and the gut microbiota

(2018) Niv Zmora et al.   Nature Reviews Gastroenterology & Hepatology

Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology

(2018) Elizabeth Theresa Miller et al.   TRENDS IN ECOLOGY & EVOLUTION

Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys

(2018) Pål Trosvik et al.   Scientific Reports

US Immigration Westernizes the Human Gut Microbiome

(2018) Pajau Vangay et al.   CELL

Clarifying distinct models of modern human origins in Africa

(2018) Brenna M Henn et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Gut microbiome transition across a lifestyle gradient in Himalaya

(2018) Aashish R. Jha et al.   PLOS BIOLOGY

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens

(2017) Sohn Kim et al.   IMMUNOLOGICAL REVIEWS

Human genetic variation and the gut microbiome in disease

(2017) Andrew Brantley Hall et al.   NATURE REVIEWS GENETICS

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

(2017) Samuel A. Smits et al.   SCIENCE

Bacterial colonization and succession in a newly opened hospital

(2017) Simon Lax et al.   Science Translational Medicine

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi )

(2017) Andrea Springer et al.   Ecology and Evolution

Potential Effects of Horizontal Gene Exchange in the Human Gut

(2017) Aaron Lerner et al.   Frontiers in Immunology

Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta)

(2016) Genevieve Bennett et al.   AMERICAN JOURNAL OF PRIMATOLOGY

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome

(2016) Meital Gury-BenAri et al.   CELL

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity

(2016) Melanie Schirmer et al.   CELL

Genetic Determinants of the Gut Microbiome in UK Twins

(2016) Julia K. Goodrich et al.   Cell Host & Microbe

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota

(2016) Jun Wang et al.   NATURE GENETICS

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Antibiotic use and its consequences for the normal microbiome

(2016) Martin J. Blaser   SCIENCE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Primary Immunodeficiencies and Inflammatory Disease: A Growing Genetic Intersection

(2016) Nassima Fodil et al.   TRENDS IN IMMUNOLOGY

Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism

(2016) Renee L. Greer et al.   Nature Communications

Marked variation between winter and spring gut microbiota in free-ranging Tibetan Macaques (Macaca thibetana)

(2016) Binghua Sun et al.   Scientific Reports

Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities

(2016) Kevin D. Kohl et al.   Frontiers in Microbiology

Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome

(2016) Hailiang Xie et al.   Cell Systems

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

(2016) Tiffany Hsu et al.   mSystems

Breastfeeding over two years is associated with longer birth intervals, but not measures of growth or health, among children in Kilimanjaro, TZ

(2015) Siobhán M. Mattison et al.   AMERICAN JOURNAL OF HUMAN BIOLOGY

Changes in intestinal tight junction permeability associated with industrial food additives explain the rising incidence of autoimmune disease

(2015) Aaron Lerner et al.   AUTOIMMUNITY REVIEWS

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

(2015) Aleksandar D. Kostic et al.   Cell Host & Microbe

Loss of Microbiota-Mediated Colonization Resistance toClostridium difficileInfection With Oral Vancomycin Compared With Metronidazole

(2015) Brittany B. Lewis et al.   JOURNAL OF INFECTIOUS DISEASES

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species

(2015) Katherine R. Amato et al.   OECOLOGIA

Early infancy microbial and metabolic alterations affect risk of childhood asthma

(2015) Marie-Claire Arrieta et al.   Science Translational Medicine

Social networks predict gut microbiome composition in wild baboons

(2015) Jenny Tung et al.   eLife

Genome-Wide Association Studies of the Human Gut Microbiota

(2015) Emily R. Davenport et al.   PLoS One

Genetic Origins of Lactase Persistence and the Spread of Pastoralism in Africa

(2014) Alessia Ranciaro et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells

(2014) Dingding An et al.   CELL

Role of the Microbiota in Immunity and Inflammation

(2014) Yasmine Belkaid et al.   CELL

The Red Queen's long race: human adaptation to pathogen pressure

(2014) Katherine J Siddle et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Commensal bacteria mediated defenses against pathogens

(2014) Michael C Abt et al.   CURRENT OPINION IN IMMUNOLOGY

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Climate variability and vulnerability to climate change: a review

(2014) Philip K Thornton et al.   GLOBAL CHANGE BIOLOGY

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism

(2014) Maomeng Tong et al.   ISME Journal

The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra)

(2014) Katherine R. Amato et al.   MICROBIAL ECOLOGY

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

The African Genome Variation Project shapes medical genetics in Africa

(2014) Deepti Gurdasani et al.   NATURE

Pathogens and host immunity in the ancient human oral cavity

(2014) Christina Warinner et al.   NATURE GENETICS

Antibiotics in early life and obesity

(2014) Laura M. Cox et al.   Nature Reviews Endocrinology

Natural selection and infectious disease in human populations

(2014) Elinor K. Karlsson et al.   NATURE REVIEWS GENETICS

Childhood malnutrition and the intestinal microbiome

(2014) Anne V. Kane et al.   PEDIATRIC RESEARCH

Rapid changes in the gut microbiome during human evolution

(2014) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiome of the Hadza hunter-gatherers

(2014) Stephanie L. Schnorr et al.   Nature Communications

Changes of the human gut microbiome induced by a fermented milk product

(2014) Patrick Veiga et al.   Scientific Reports

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

Acquiring and maintaining a normal oral microbiome: current perspective

(2014) Egija Zaura et al.   Frontiers in Cellular and Infection Microbiology

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

The scaling of contact rates with population density for the infectious disease models

(2013) Hao Hu et al.   MATHEMATICAL BIOSCIENCES

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

The environmental context for the origins of modern human diversity: A synthesis of regional variability in African climate 150,000–30,000 years ago

(2012) Margaret Whiting Blome et al.   JOURNAL OF HUMAN EVOLUTION

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

(2012) K. G. Andersen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Insights from Characterizing Extinct Human Gut Microbiomes

(2012) Raul Y. Tito et al.   PLoS One

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Composition of Human Skin Microbiota Affects Attractiveness to Malaria Mosquitoes

(2011) Niels O. Verhulst et al.   PLoS One

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Diets of Early Hominins

(2011) P. S. Ungar et al.   SCIENCE

Evolutionary Adaptations to Dietary Changes

(2010) F. Luca et al.   Annual Review of Nutrition

Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine

(2010) Ken Cadwell et al.   CELL

The evolution of HIV-1 and the origin of AIDS

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reversible Microbial Colonization of Germ-Free Mice Reveals the Dynamics of IgA Immune Responses

(2010) S. Hapfelmeier et al.   SCIENCE

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

Butyrate Improves Insulin Sensitivity and Increases Energy Expenditure in Mice

(2009) Z. Gao et al.   DIABETES

The ecology of climate change and infectious diseases

(2009) Kevin D. Lafferty   ECOLOGY

Coadaptation of Helicobacter pylori and humans: ancient history, modern implications

(2009) John C. Atherton et al.   JOURNAL OF CLINICAL INVESTIGATION

Intestinal Nitrogen Recycling and Utilization in Health and Disease

(2009) Werner G. Bergen et al.   JOURNAL OF NUTRITION

Oldest Evidence of Toolmaking Hominins in a Grassland-Dominated Ecosystem

(2009) Thomas W. Plummer et al.   PLoS One

Evolutionary History and Phylogeography of Human Viruses

(2008) Edward C. Holmes   Annual Review of Microbiology

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY