Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden

Extracellular DNA in natural environments: features, relevance and applications

(2018) Magdalena Nagler et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation

(2018) Inger Greve Alsos et al.   PLoS One

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

(2018) Engy Ahmed et al.   QUATERNARY SCIENCE REVIEWS

Warm summers during the Younger Dryas cold reversal

(2018) Frederik Schenk et al.   Nature Communications

Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra

(2018) Mary E Edwards et al.   HOLOCENE

Holocene floristic diversity and richness in northeast Norway revealed by sedimentary ancient DNA (sed aDNA) and pollen

(2018) Charlotte L. Clarke et al.   BOREAS

Lags in the response of mountain plant communities to climate change

(2017) Jake M. Alexander et al.   GLOBAL CHANGE BIOLOGY

A comparison of sedimentary DNA and pollen from lake sediments in recording vegetation composition at the Siberian treeline

(2017) Bastian Niemeyer et al.   Molecular Ecology Resources

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Ancient plant DNA in lake sediments

(2017) Laura Parducci et al.   NEW PHYTOLOGIST

Neandertal and Denisovan DNA from Pleistocene sediments

(2017) Viviane Slon et al.   SCIENCE

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data

(2017) Heike Zimmermann et al.   Genes

Hässeldala - a key site for Last Termination climate events in northern Europe

(2016) Barbara Wohlfarth et al.   BOREAS

Postglacial viability and colonization in North America’s ice-free corridor

(2016) Mikkel W. Pedersen et al.   NATURE

Lake sedimentary DNA accurately records 20thCentury introductions of exotic conifers in Scotland

(2016) Per Sjögren et al.   NEW PHYTOLOGIST

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

(2016) Lucie Zinger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change

(2015) Inger Greve Alsos et al.   HOLOCENE

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

(2015) Johan Pansu et al.   MOLECULAR ECOLOGY

How have studies of ancient DNA from sediments contributed to the reconstruction of Quaternary floras?

(2015) H. John B. Birks et al.   NEW PHYTOLOGIST

Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes

(2015) L.S. Epp et al.   QUATERNARY SCIENCE REVIEWS

Fennoscandian freshwater control on Greenland hydroclimate shifts at the onset of the Younger Dryas

(2015) Francesco Muschitiello et al.   Nature Communications

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

Fifty thousand years of Arctic vegetation and megafaunal diet

(2014) Eske Willerslev et al.   NATURE

Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA

(2014) L. Parducci et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dating, synthesis, and interpretation of palaeoclimatic records of the Last Glacial cycle and model-data integration: advances by the INTIMATE (INTegration of Ice-core, MArine and TErrestrial records) COST Action ES0907

(2014) Sune O. Rasmussen et al.   QUATERNARY SCIENCE REVIEWS

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Geochemical responses to paleoclimatic changes in southern Sweden since the late glacial: the Hässeldala Port lake sediment record

(2013) Malin E. Kylander et al.   JOURNAL OF PALEOLIMNOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

(2012) M. E. Allentoft et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Glacial Survival of Boreal Trees in Northern Scandinavia

(2012) L. Parducci et al.   SCIENCE

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Synchronisation of palaeoenvironmental records over the last 60,000 years, and an extended INTIMATE event stratigraphy to 48,000 b2k

(2011) Simon P.E. Blockley et al.   QUATERNARY SCIENCE REVIEWS

An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications

(2010) Sophie Champlot et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Synchronisation of palaeoenvironmental events in the North Atlantic region during the Last Termination: a revised protocol recommended by the INTIMATE group

(2008) J.J. Lowe et al.   QUATERNARY SCIENCE REVIEWS

High-Resolution Greenland Ice Core Data Show Abrupt Climate Change Happens in Few Years

(2008) J. P. Steffensen et al.   SCIENCE