Neandertal and Denisovan DNA from Pleistocene sediments

Single-stranded DNA library preparation from highly degraded DNA usingT4DNA ligase

(2017) Marie-Theres Gansauge et al.   NUCLEIC ACIDS RESEARCH

Palaeoenvironments during the period of the Neanderthals settlement in Chagyrskaya cave (Altai Mountains, Russia)

(2017) Natalia Rudaya et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

The Divergence of Neandertal and Modern Human Y Chromosomes

(2016) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds

(2016) Vendela K. Lagerholm et al.   GLOBAL CHANGE BIOLOGY

Postglacial viability and colonization in North America’s ice-free corridor

(2016) Mikkel W. Pedersen et al.   NATURE

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

(2016) Matthias Meyer et al.   NATURE

Ancient gene flow from early modern humans into Eastern Neanderthals

(2016) Martin Kuhlwilm et al.   NATURE

Timing and causes of mid-Holocene mammoth extinction on St. Paul Island, Alaska

(2016) Russell W. Graham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA and human history

(2016) Montgomery Slatkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The colonization history of British water vole (Arvicola amphibius(Linnaeus, 1758)): origins and development of the Celtic fringe

(2016) Selina Brace et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Environmental context of the Caune de l'Arago Acheulean occupations (Tautavel, France), new insights from microvertebrates in Q–R levels

(2016) Loïc Lebreton et al.   QUATERNARY INTERNATIONAL

Mammalian mitochondrial capture, a tool for rapid screening of DNA preservation in faunal and undiagnostic remains, and its application to Middle Pleistocene specimens from Qesem Cave (Israel)

(2016) Viviane Slon et al.   QUATERNARY INTERNATIONAL

Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis

(2016) Samantha Brown et al.   Scientific Reports

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth

(2015) Petra Korlević et al.   BIOTECHNIQUES

Using ZooMS to identify fragmentary bone from the Late Middle/Early Upper Palaeolithic sequence of Les Cottés, France

(2015) Frido Welker et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Testing of a single grain OSL chronology across the Middle to Upper Palaeolithic transition at Les Cottés (France)

(2015) Zenobia Jacobs et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Nuclear and mitochondrial DNA sequences from two Denisovan individuals

(2015) Susanna Sawyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New ESR and U-series dating at Caune de l'Arago, France: A key-site for European Middle Pleistocene

(2015) C. Falguères et al.   Quaternary Geochronology

Gravettian hunting and exploitation of bears in Central Europe

(2015) Piotr Wojtal et al.   QUATERNARY INTERNATIONAL

Comment on "Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans"

(2015) K. Prufer et al.   SCIENCE

Mitochondrial Genomes of Giant Deers Suggest their Late Survival in Central Europe

(2015) Alexander Immel et al.   Scientific Reports

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data

(2015) Clemens L Weiß et al.   eLife

Preservation potential of ancient plankton DNA in Pleistocene marine sediments

(2015) A. C. BOERE et al.   Geobiology

Selective enrichment of damaged DNA molecules for ancient genome sequencing

(2014) Marie-Theres Gansauge et al.   GENOME RESEARCH

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

Patterns of coding variation in the complete exomes of three Neandertals

(2014) S. Castellano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long livestock farming history and human landscape shaping revealed by lake sediment DNA

(2014) Charline Giguet-Covex et al.   Nature Communications

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

(2013) Gabriel Renaud et al.   BIOINFORMATICS

Identification of Neandertal individuals in fragmentary fossil assemblages by means of tooth associations: The case of El Sidrón (Asturias, Spain)

(2013) Antonio Rosas et al.   COMPTES RENDUS PALEVOL

The Caune de l’Arago stone industries in their stratigraphical context

(2013) Deborah Barsky   COMPTES RENDUS PALEVOL

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Late-glacial recolonization and phylogeography of European red deer (Cervus elaphusL.)

(2013) Meirav Meiri et al.   MOLECULAR ECOLOGY

A mitochondrial genome sequence of a hominin from Sima de los Huesos

(2013) Matthias Meyer et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

(2013) Katarzyna Zaremba-Niedźwiedzka et al.   PLoS One

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial DNA diversity and evolution of the Pleistocene cave bear complex

(2013) Mathias Stiller et al.   QUATERNARY INTERNATIONAL

A NEW DATE FOR THE NEANDERTHALS FROM EL SIDRÓN CAVE (ASTURIAS, NORTHERN SPAIN)*

(2012) R. E. WOOD et al.   ARCHAEOMETRY

Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries

(2012) Jesse Dabney et al.   BIOTECHNIQUES

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

(2012) Susanna Sawyer et al.   PLoS One

Serial population extinctions in a small mammal indicate Late Pleistocene ecosystem instability

(2012) S. Brace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

(2012) M. E. Allentoft et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Clay minerals of late Pleistocene sites (Jonzac and Les Cottés, SW France): Applications of X-ray diffraction analyses to local paleoclimatic and paleoenvironmental reconstructions

(2012) Marine Frouin et al.   QUATERNARY INTERNATIONAL

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

(2012) Dáithí C. Murray et al.   QUATERNARY SCIENCE REVIEWS

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Nondestructive sampling of human skeletal remains yields ancient nuclear and mitochondrial DNA

(2011) Deborah A. Bolnick et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

A radiocarbon chronology for the complete Middle to Upper Palaeolithic transitional sequence of Les Cottés (France)

(2011) Sahra Talamo et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Genotyping of Capreolus pygargus Fossil DNA from Denisova Cave Reveals Phylogenetic Relationships between Ancient and Modern Populations

(2011) Nadezhda V. Vorobieva et al.   PLoS One

Pleistocene bears in the Swabian Jura (Germany): Genetic replacement, ecological displacement, extinctions and survival

(2011) Susanne C. Münzel et al.   QUATERNARY INTERNATIONAL

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Paper II - Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies

(2010) LEE J. ARNOLD et al.   BOREAS

A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia

(2010) Johannes Krause et al.   CURRENT BIOLOGY

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

(2010) Johannes Krause et al.   NATURE

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

A Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius)

(2010) Ceiridwen J. Edwards et al.   PLoS One

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Genetic evidence for patrilocal mating behavior among Neandertal groups

(2010) C. Lalueza-Fox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution

(2009) Eske Willerslev et al.   BMC EVOLUTIONARY BIOLOGY

Extinction of the woolly mammoth (Mammuthus primigenius) and woolly rhinoceros (Coelodonta antiquitatis) in Eurasia: Review of chronological and environmental issues

(2009) YAROSLAV V. KUZMIN   BOREAS

The Neandertal genome and ancient DNA authenticity

(2009) Richard E Green et al.   EMBO JOURNAL

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

(2009) James Haile et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Last glacial climates, “Refugia”, and faunal change in Southeastern Europe: Mammalian assemblages from Veternica, Velika pećina, and Vindija caves (Croatia)

(2009) Preston T. Miracle et al.   QUATERNARY INTERNATIONAL

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL