Computational Analysis of HLA-presentation of Non-synonymous Recipient Mismatches Indicates Effect on the Risk of Chronic Graft-vs.-Host Disease After Allogeneic HSCT

Hidden genomic MHC disparity between HLA-matched sibling pairs in hematopoietic stem cell transplantation

(2018) Satu Koskela et al.   Scientific Reports

Genomic prediction of relapse in recipients of allogeneic haematopoietic stem cell transplantation

(2018) J. Ritari et al.   LEUKEMIA

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation

(2017) Vishal Koparde et al.   PLoS One

Genome-wide minor histocompatibility matching as related to the risk of graft-versus-host disease

(2016) Paul J. Martin et al.   BLOOD

Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells

(2016) Andréanne Morin et al.   BMC Medical Genomics

Proteogenomic-based discovery of minor histocompatibility antigens with suitable features for immunotherapy of hematologic cancers

(2016) D P Granados et al.   LEUKEMIA

Autosomal Minor Histocompatibility Antigens: How Genetic Variants Create Diversity in Immune Targets

(2016) Marieke Griffioen et al.   Frontiers in Immunology

Allogeneic HY antibodies detected 3 months after female-to-male HCT predict chronic GVHD and nonrelapse mortality in humans

(2015) H. Nakasone et al.   BLOOD

SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations

(2015) Xiaowei Zhan et al.   GENETIC EPIDEMIOLOGY

Neoantigens in cancer immunotherapy

(2015) T. N. Schumacher et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation

(2014) Juliana K. Sampson et al.   BRITISH JOURNAL OF HAEMATOLOGY

The immune epitope database (IEDB) 3.0

(2014) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides

(2014) Diana Paola Granados et al.   Nature Communications

In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation

(2014) Max Jameson-Lee et al.   Frontiers in Immunology

Multicenter Analyses Demonstrate Significant Clinical Effects of Minor Histocompatibility Antigens on GvHD and GvL after HLA-Matched Related and Unrelated Hematopoietic Stem Cell Transplantation

(2013) Eric Spierings et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

High-resolution HLA matching in hematopoietic stem cell transplantation: a retrospective collaborative analysis

(2013) D. Furst et al.   BLOOD

Minor histocompatibility antigens as determinants for graft-versus-host disease after allogeneic haematopoietic stem cell transplantation

(2013) H. Turpeinen et al.   International Journal of Immunogenetics

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

(2013) Jorg J. A. Calis et al.   PLoS Computational Biology

Association of Disparities in Known Minor Histocompatibility Antigens with Relapse-Free Survival and Graft-versus-Host Disease after Allogeneic Stem Cell Transplantation

(2012) Willemijn Hobo et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

(2011) Edita Karosiene et al.   IMMUNOGENETICS

A Polymorphism in the Splice Donor Site of ZNF419 Results in the Novel Renal Cell Carcinoma-Associated Minor Histocompatibility Antigen ZAPHIR

(2011) Kelly Broen et al.   PLoS One

Degree of Predicted Minor Histocompatibility Antigen Mismatch Correlates with Poorer Clinical Outcomes in Nonmyeloablative Allogeneic Hematopoietic Cell Transplantation

(2010) Malene Erup Larsen et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Graft versus Leukemia Reactivity after Allogeneic Stem Cell Transplantation

(2010) J.H. Frederik Falkenburg et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

High-Throughput Characterization of 10 New Minor Histocompatibility Antigens by Whole Genome Association Scanning

(2010) C. A. M. Van Bergen et al.   CANCER RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

NetCTLpan: pan-specific MHC class I pathway epitope predictions

(2010) Thomas Stranzl et al.   IMMUNOGENETICS

MHC Class II epitope predictive algorithms

(2010) Morten Nielsen et al.   IMMUNOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Graft-versus-host disease

(2009) James LM Ferrara et al.   LANCET

Donor-recipient mismatch for common gene deletion polymorphisms in graft-versus-host disease

(2009) Steven A McCarroll et al.   NATURE GENETICS