Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity
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Title
Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity
Authors
Keywords
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Journal
eLife
Volume 8, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2019-06-21
DOI
10.7554/elife.41266
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Note: Only part of the references are listed.- Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation
- (2018) Rui R. Catarino et al. GENES & DEVELOPMENT
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- (2018) Telmo Henriques et al. GENES & DEVELOPMENT
- Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
- (2018) Nathan M. Belliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2018) Manuel Razo-Mejia et al. Cell Systems
- Self-consistent theory of transcriptional control in complex regulatory architectures
- (2017) Jasper Landman et al. PLoS One
- A Fully Synthetic Transcriptional Platform for a Multicellular Eukaryote
- (2017) Justin Crocker et al. Cell Reports
- Decoding temporal interpretation of the morphogen Bicoid in the early Drosophila embryo
- (2017) Anqi Huang et al. eLife
- Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle
- (2017) Clarissa Scholes et al. Cell Systems
- Information Integration and Energy Expenditure in Gene Regulation
- (2016) Javier Estrada et al. CELL
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
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- (2016) Fabiana M. Duarte et al. GENES & DEVELOPMENT
- SiteOut: An Online Tool to Design Binding Site-Free DNA Sequences
- (2016) Javier Estrada et al. PLoS One
- DNA-dependent formation of transcription factor pairs alters their binding specificity
- (2015) Arttu Jolma et al. NATURE
- Combining protein and mRNA quantification to decipher transcriptional regulation
- (2015) Heng Xu et al. NATURE METHODS
- The Mediator complex: a central integrator of transcription
- (2015) Benjamin L. Allen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mid-Embryo Patterning and Precision in Drosophila Segmentation: Krüppel Dual Regulation of hunchback
- (2015) David M. Holloway et al. PLoS One
- Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila
- (2014) Z. Xu et al. GENES & DEVELOPMENT
- Comparing mRNA levels using in situ hybridization of a target gene and co-stain
- (2014) Zeba Wunderlich et al. METHODS
- The embryo as a laboratory: quantifying transcription in Drosophila
- (2014) Thomas Gregor et al. TRENDS IN GENETICS
- The Underappreciated Role of Allostery in the Cellular Network
- (2013) Ruth Nussinov et al. Annual Review of Biophysics
- Transcriptional/epigenetic regulator CBP/p300 in tumorigenesis: structural and functional versatility in target recognition
- (2013) Feng Wang et al. CELLULAR AND MOLECULAR LIFE SCIENCES
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- (2013) Antoine Coulon et al. NATURE REVIEWS GENETICS
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- (2013) Gabriel E Zentner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Covariation between homeodomain transcription factors and the shape of their DNA binding sites
- (2013) Iris Dror et al. NUCLEIC ACIDS RESEARCH
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- (2013) F. Liu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) Junbo Liu et al. Nature Communications
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- (2013) Ah-Ram Kim et al. PLoS Genetics
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- (2012) Francisco J.P. Lopes et al. DEVELOPMENTAL BIOLOGY
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- (2011) Ty C. Voss et al. CELL
- ATP-dependent chromatin remodeling: genetics, genomics and mechanisms
- (2011) Diana C Hargreaves et al. CELL RESEARCH
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