A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila

Evolution of Gene Regulatory Networks Controlling Body Plan Development

(2011) Isabelle S. Peter et al.   CELL

How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation

(2011) M. D. Schroeder et al.   DEVELOPMENT

Single-cell genomics

(2011) Tomer Kalisky et al.   NATURE METHODS

Disease Risk Links to Gene Regulation

(2011) E. Pennisi   SCIENCE

The Developmental Role of Agouti in Color Pattern Evolution

(2011) M. Manceau et al.   SCIENCE

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

(2011) Bin Z. He et al.   PLoS Genetics

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

(2011) Sean Thomas et al.   GENOME BIOLOGY

Meeting report: First light sheet based fluorescence microscopy workshop

(2010) Emmanuel G. Reynaud et al.   Biotechnology Journal

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Pathline: A Tool For Comparative Functional Genomics

(2010) M. Meyer et al.   COMPUTER GRAPHICS FORUM

Maternal activation of gap genes in the hover fly Episyrphus

(2010) S. Lemke et al.   DEVELOPMENT

EVOLUTION AND INHERITANCE OF EARLY EMBRYONIC PATTERNING IN DROSOPHILA SIMULANS AND D. SECHELLIA

(2010) Susan E. Lott et al.   EVOLUTION

ARTIFICIAL SELECTION ON EGG SIZE PERTURBS EARLY PATTERN FORMATION IN DROSOPHILA MELANOGASTER

(2010) Cecelia M. Miles et al.   EVOLUTION

Changes in Selective Effects Over Time Facilitate Turnover of Enhancer Sequences

(2010) K. Bullaughey   GENETICS

Genome-wide analysis of promoter architecture in Drosophila melanogaster

(2010) R. A. Hoskins et al.   GENOME RESEARCH

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

(2010) E. Berezikov et al.   GENOME RESEARCH

MulteeSum: A Tool for Comparative Spatial and Temporal Gene Expression Data

(2010) M Meyer et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo

(2010) Walid D Fakhouri et al.   Molecular Systems Biology

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

(2010) Robert K. Bradley et al.   PLOS BIOLOGY

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

(2010) Xin He et al.   PLoS Computational Biology

Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information

(2009) Antonio CA Meireles-Filho et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

From elements to modules: regulatory evolution in Ascomycota fungi

(2009) Dana J Wohlbach et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Selective plane illumination microscopy techniques in developmental biology

(2009) J. Huisken et al.   DEVELOPMENT

Giant, Krüppel, and caudal act as gap genes with extensive roles in patterning the honeybee embryo

(2009) Megan J. Wilson et al.   DEVELOPMENTAL BIOLOGY

Regulatory Divergence in Drosophila melanogaster and D. simulans, a Genomewide Analysis of Allele-Specific Expression

(2009) R. M. Graze et al.   GENETICS

Intraspecific Polymorphism to Interspecific Divergence: Genetics of Pigmentation in Drosophila

(2009) P. J. Wittkopp et al.   SCIENCE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Evolution of Regulatory Sequences in 12 Drosophila Species

(2009) Jaebum Kim et al.   PLoS Genetics

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

(2009) Stewart MacArthur et al.   GENOME BIOLOGY

Heads and tails: Evolution of antero-posterior patterning in insects

(2008) Miriam I. Rosenberg et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

bicoidoccurrence and Bicoid-dependenthunchbackregulation in lower cyclorrhaphan flies

(2008) Steffen Lemke et al.   EVOLUTION & DEVELOPMENT

Predicting expression patterns from regulatory sequence in Drosophila segmentation

(2008) Eran Segal et al.   NATURE

Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts

(2008) Justin Crocker et al.   PLOS BIOLOGY

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

(2008) Emily E. Hare et al.   PLoS Genetics