Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater

Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks

(2018) Eva Aylagas et al.   ECOLOGICAL INDICATORS

Evaluation of plant contamination in metabarcoding diet analysis of a herbivore

(2018) Haruko Ando et al.   Scientific Reports

A comparative analysis of metabarcoding and morphology-based identification of benthic communities across different regional seas

(2018) Abigail E. Cahill et al.   Ecology and Evolution

Is marine sediment the source of microbes associated with accelerated low water corrosion?

(2018) Hoang C. Phan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Predictors of Phytophthora diversity and community composition in natural areas across diverse Australian ecoregions

(2018) Treena I. Burgess et al.   ECOGRAPHY

Challenges for assessing vertebrate diversity in turbid Saharan water-bodies using environmental DNA

(2018) Bastian Egeter et al.   GENOME

Assessing high-throughput environmental DNA extraction methods for meta-barcode characterization of aquatic microbial communities

(2018) Abdolrazagh Hashemi Shahraki et al.   JOURNAL OF WATER AND HEALTH

Body size determines soil community assembly in a tropical forest

(2018) Lucie Zinger et al.   MOLECULAR ECOLOGY

The endangered northern bettong, Bettongia tropica , performs a unique and potentially irreplaceable dispersal function for ectomycorrhizal truffle fungi

(2018) Susan J. Nuske et al.   MOLECULAR ECOLOGY

Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island)

(2018) Mylène Hugoni et al.   MOLECULAR ECOLOGY

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring

(2018) Andjin Siegenthaler et al.   Molecular Ecology Resources

Table for five, please: Dietary partitioning in boreal bats

(2018) Eero J. Vesterinen et al.   Ecology and Evolution

Microbial Community Structure in a Malaysian Tropical Peat Swamp Forest: The Influence of Tree Species and Depth

(2018) Chin Chin Too et al.   Frontiers in Microbiology

Shifts in community composition and co-occurrence patterns of phyllosphere fungi inhabiting Mussaenda shikokiana along an elevation gradient

(2018) Xin Qian et al.   PeerJ

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring

(2016) Mehrdad Hajibabaei et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Implementation of Novel Design Features for qPCR-Based eDNA Assessment

(2016) Nik Veldhoen et al.   PLoS One

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

(2015) Joel F. Gibson et al.   PLoS One

A DNA Mini-Barcoding System for Authentication of Processed Fish Products

(2015) Shadi Shokralla et al.   Scientific Reports

Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)

(2014) Eva Aylagas et al.   PLoS One

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One