Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring

Freshwater fisheries assessment using environmental DNA: A primer on the method, its potential, and shortcomings as a conservation tool

(2018) Nathan T. Evans et al.   FISHERIES RESEARCH

Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys

(2018) Erin K. Grey et al.   Scientific Reports

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

(2018) Owen S. Wangensteen et al.   PeerJ

DNA metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist

(2018) Andjin Siegenthaler et al.   MOLECULAR ECOLOGY

Comparative Cost and Effort of Fish Distribution Detection via Environmental DNA Analysis and Electrofishing

(2017) Nathan T. Evans et al.   FISHERIES

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

(2017) Hirotoshi Sato et al.   Scientific Reports

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding

(2017) Elizabeth A. Andruszkiewicz et al.   PLoS One

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities

(2016) Jessica L. Ray et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Assessing the cost-efficiency of environmental DNA sampling

(2016) Adam S. Smart et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Fish environmental DNA is more concentrated in aquatic sediments than surface water

(2015) Cameron R. Turner et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Effectiveness of DNA barcoding for identifying piscine prey items in stomach contents of piscivorous catfishes

(2015) Z. Moran et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

(2015) Anthony A. Chariton et al.   ENVIRONMENTAL POLLUTION

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool – prospects, pitfalls and avenues to be developed

(2015) Ida Bærholm Schnell et al.   Frontiers in Zoology

It takes guts to locate elusive crustacean prey

(2015) RS Lasley-Rasher et al.   MARINE ECOLOGY PROGRESS SERIES

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents

(2015) Beverly McClenaghan et al.   Ecology and Evolution

It takes guts to locate elusive crustacean prey

(2015) RS Lasley-Rasher et al.   MARINE ECOLOGY PROGRESS SERIES

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

(2015) Franck Lejzerowicz et al.   Scientific Reports

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

True Value of Estuarine and Coastal Nurseries for Fish: Incorporating Complexity and Dynamics

(2014) Marcus Sheaves et al.   Estuaries and Coasts

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

Examining the Effectiveness of Consumer Diet Sampling as a Nonnative Detection Tool in a Subtropical Estuary

(2014) Ross E. Boucek et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

An invertebrate stomach's view on vertebrate ecology

(2013) Sébastien Calvignac-Spencer et al.   BIOESSAYS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Screening mammal biodiversity using DNA from leeches

(2012) Ida Bærholm Schnell et al.   CURRENT BIOLOGY

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

A test of the senses: Fish select novel habitats by responding to multiple cues

(2011) Chantal M. Huijbers et al.   ECOLOGY

Food resource use in sympatric juvenile plaice and flounder in estuarine habitats

(2011) Stefano Mariani et al.   Marine Ecology-An Evolutionary Perspective

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Invasive Species, Environmental Change and Management, and Health

(2010) Petr Pyšek et al.   Annual Review of Environment and Resources

Posthurricane Recovery of Riverine Fauna Reflected in the Diet of an Apex Predator

(2010) Philip W. Stevens et al.   Estuaries and Coasts

Anthropogenic disturbance on nursery function of estuarine areas for marine species

(2008) A. Courrat et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

(2008) Hege Vestheim et al.   Frontiers in Zoology

A Global Map of Human Impact on Marine Ecosystems

(2008) Benjamin S. Halpern et al.   SCIENCE