Genetic basis of ruminant headgear and rapid antler regeneration

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

(2019) Lei Chen et al.   SCIENCE

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

(2018) Daniel E. Wagner et al.   SCIENCE

NOVA1 regulates hTERT splicing and cell growth in non-small cell lung cancer

(2018) Andrew T. Ludlow et al.   Nature Communications

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

(2017) Derek M Bickhart et al.   NATURE GENETICS

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

FAM83A is amplified and promotes cancer stem cell-like traits and chemoresistance in pancreatic cancer

(2017) S Chen et al.   Oncogenesis

The placenta as a model for understanding the origin and evolution of vertebrate organs

(2017) Oliver W. Griffith et al.   Nature Ecology & Evolution

Genome-wide association reveals the locus responsible for four-horned ruminant

(2016) James W. Kijas et al.   ANIMAL GENETICS

The extinct, giant giraffidSivatherium giganteum: skeletal reconstruction and body mass estimation

(2016) Christopher Basu et al.   Biology Letters

A benchmark of gene expression tissue-specificity metrics

(2016) Nadezda Kryuchkova-Mostacci et al.   BRIEFINGS IN BIOINFORMATICS

Production of hornless dairy cattle from genome-edited cell lines

(2016) Daniel F Carlson et al.   NATURE BIOTECHNOLOGY

The Giraffidae of Maragheh and the identification of a new species of Honanotherium

(2016) Nikos Solounias et al.   Palaeobiodiversity and Palaeoenvironments

A 1.8-kb insertion in the 3′-UTR ofRXFP2is associated with polledness in sheep

(2015) Natalie Wiedemar et al.   ANIMAL GENETICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Potential Mechanisms for Cancer Resistance in Elephants and Comparative Cellular Response to DNA Damage in Humans

(2015) Lisa M. Abegglen et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Whole-genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep

(2015) Marty Kardos et al.   MOLECULAR ECOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Systematics and phylogeny of middle Miocene Cervidae (Mammalia) from Mae Moh Basin (Thailand) and a paleoenvironmental estimate using enamel isotopy of sympatric herbivore species

(2014) Kantapon Suraprasit et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

The sheep genome illuminates biology of the rumen and lipid metabolism

(2014) Y. Jiang et al.   SCIENCE

Middle Miocene Bovidae from Mae Moh Basin, Northern Thailand: the first record of the genus Eotragus from Southeast Asia

(2013) Kantapon Suraprasit   ACTA PALAEONTOLOGICA POLONICA

Childhood intelligence is heritable, highly polygenic and associated with FNBP1L

(2013) B Benyamin et al.   MOLECULAR PSYCHIATRY

High-molecular-mass hyaluronan mediates the cancer resistance of the naked mole rat

(2013) Xiao Tian et al.   NATURE

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

Mutations in TUBG1, DYNC1H1, KIF5C and KIF2A cause malformations of cortical development and microcephaly

(2013) Karine Poirier et al.   NATURE GENETICS

A molecular machine for neurotransmitter release: synaptotagmin and beyond

(2013) Thomas C Südhof   NATURE MEDICINE

MBD6 is a direct target of Oct4 and controls the stemness and differentiation of adipose tissue-derived stem cells

(2012) Jin Sun Jung et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

A Newly Described Bovine Type 2 Scurs Syndrome Segregates with a Frame-Shift Mutation in TWIST1

(2011) Aurélien Capitan et al.   PLoS One

Evolution of ruminant headgear: a review

(2011) E. B. Davis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

AnteriorHoxGenes Interact with Components of the Neural Crest Specification Network to Induce Neural Crest Fates

(2011) Mina Gouti et al.   STEM CELLS

Adult Stem Cells and Mammalian Epimorphic Regeneration-Insights from Studying Annual Renewal of Deer Antlers

(2011) Chunyi Li et al.   Current Stem Cell Research & Therapy

Assembling Neural Crest Regulatory Circuits into a Gene Regulatory Network

(2010) Paola Betancur et al.   Annual Review of Cell and Developmental Biology

Neighbor effects of neurons bearing protective transgenes

(2010) Angela L. Lee et al.   BRAIN RESEARCH

Sexual dimorphism of the frontal appendages of the early Miocene African pecoranProlibytheriumArambourg, 1961 (Mammalia, Ruminantia)

(2010) Israel M. Sánchez et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY