DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling
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Title
DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-07-12
DOI
10.1093/nar/gkz620
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Note: Only part of the references are listed.- Apurinic/apyrimidinic endonuclease Apn1 from Saccharomyces cerevisiae is recruited to the nucleotide incision repair pathway: Kinetic and structural features
- (2018) Elena S. Dyakonova et al. BIOCHIMIE
- Room-temperature distance measurements using RIDME and the orthogonal spin labels trityl/nitroxide
- (2018) Andrey A. Kuzhelev et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Molecular snapshots of APE1 proofreading mismatches and removing DNA damage
- (2018) Amy M. Whitaker et al. Nature Communications
- Substrate specificity of human apurinic/apyrimidinic endonuclease APE1 in the nucleotide incision repair pathway
- (2018) Alexandra A Kuznetsova et al. NUCLEIC ACIDS RESEARCH
- Dynamic light scattering study of base excision DNA repair proteins and their complexes
- (2018) Inna A. Vasil'eva et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- EPR-based distance measurements at ambient temperature
- (2017) Olesya Krumkacheva et al. JOURNAL OF MAGNETIC RESONANCE
- A Versatile Approach to Attachment of Triarylmethyl Labels to DNA for Nanoscale Structural EPR Studies at Physiological Temperatures
- (2017) Georgiy Yu. Shevelev et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Resolving the Conformational Dynamics of DNA with Ångstrom Resolution by Pulsed Electron–Electron Double Resonance and Molecular Dynamics
- (2017) Lukas S. Stelzl et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Structural rearrangements in mRNA upon its binding to human 80S ribosomes revealed by EPR spectroscopy
- (2017) Alexey A Malygin et al. NUCLEIC ACIDS RESEARCH
- Polymorphism of apyrimidinic DNA structures in the nucleosome
- (2017) Akihisa Osakabe et al. Scientific Reports
- Selective High-Resolution Detection of Membrane Protein-Ligand Interaction in Native Membranes Using Trityl-Nitroxide PELDOR
- (2016) Benesh Joseph et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Versatile Trityl Spin Labels for Nanometer Distance Measurements on Biomolecules In Vitro and within Cells
- (2016) J. Jacques Jassoy et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA
- (2016) Modesto Redrejo-Rodríguez et al. BIOCHIMIE
- Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels
- (2016) Alexander A. Lomzov et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Complementary-addressed site-directed spin labeling of long natural RNAs
- (2016) Elena S. Babaylova et al. NUCLEIC ACIDS RESEARCH
- Interaction of triarylmethyl radicals with DNA termini revealed by orientation-selective W-band double electron–electron resonance spectroscopy
- (2016) Matvey V. Fedin et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Conformational dynamics of nucleic acid molecules studied by PELDOR spectroscopy with rigid spin labels
- (2015) T.F. Prisner et al. JOURNAL OF MAGNETIC RESONANCE
- Evaluation of the Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation
- (2015) Alexander A. Lomzov et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Triarylmethyl Labels: Toward Improving the Accuracy of EPR Nanoscale Distance Measurements in DNAs
- (2015) Georgiy Yu. Shevelev et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Quantitative characterization of protein–protein complexes involved in base excision DNA repair
- (2015) Nina A. Moor et al. NUCLEIC ACIDS RESEARCH
- The role of Asn-212 in the catalytic mechanism of human endonuclease APE1: Stopped-flow kinetic study of incision activity on a natural AP site and a tetrahydrofuran analogue
- (2014) Lyubov Yu. Kanazhevskaya et al. DNA REPAIR
- Physiological-Temperature Distance Measurement in Nucleic Acid using Triarylmethyl-Based Spin Labels and Pulsed Dipolar EPR Spectroscopy
- (2014) Georgiy Yu. Shevelev et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- EPR-aided approach for solution structure determination of large RNAs or protein–RNA complexes
- (2014) Olivier Duss et al. Nature Communications
- Structure of human apurinic/apyrimidinic endonuclease 1 with the essential Mg2+cofactor
- (2013) Brittney A. Manvilla et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Transient-State Kinetics of Apurinic/Apyrimidinic (AP) Endonuclease 1 Acting on an Authentic AP Site and Commonly Used Substrate Analogs: The Effect of Diverse Metal Ions and Base Mismatches
- (2013) Kelly M. Schermerhorn et al. BIOCHEMISTRY
- Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes
- (2013) Susan E. Tsutakawa et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Conformational Dynamics of Abasic DNA upon Interactions with AP Endonuclease 1 Revealed by Stopped-Flow Fluorescence Analysis
- (2012) Lyubov Yu. Kanazhevskaya et al. BIOCHEMISTRY
- Trityl Radicals: Spin Labels for Nanometer-Distance Measurements
- (2012) Gunnar W. Reginsson et al. CHEMISTRY-A EUROPEAN JOURNAL
- Pulsed ESR Dipolar Spectroscopy for Distance Measurements in Immobilized Spin Labeled Proteins in Liquid Solution
- (2012) Zhongyu Yang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Protein-induced changes in DNA structure and dynamics observed with noncovalent site-directed spin labeling and PELDOR
- (2012) Gunnar W. Reginsson et al. NUCLEIC ACIDS RESEARCH
- PELDOR analysis of enzyme-induced structural changes in damaged DNA duplexes
- (2011) N. A. Kuznetsov et al. Molecular BioSystems
- PELDOR study of conformations of double-spin-labeled single- and double-stranded DNA with non-nucleotide inserts
- (2009) Nikita A. Kuznetsov et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
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