Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance

A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

(2019) Mark Charles Derbyshire et al.   PLoS One

The birth and death of effectors in rapidly evolving filamentous pathogen genomes

(2018) Simone Fouché et al.   CURRENT OPINION IN MICROBIOLOGY

Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens

(2018) Olivier Navaud et al.   MOLECULAR ECOLOGY

Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function

(2018) Jiorgos Kourelis et al.   PLANT CELL

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant–Microbe Interactions

(2018) Silvia Zanini et al.   Frontiers in Plant Science

Expression polymorphism at the ARPC4 locus links the actin cytoskeleton with quantitative disease resistance to Sclerotinia sclerotiorum in Arabidopsis thaliana

(2018) Thomas Badet et al.   NEW PHYTOLOGIST

The Complete Genome Sequence of the Phytopathogenic Fungus Sclerotinia sclerotiorum Reveals Insights into the Genome Architecture of Broad Host Range Pathogens

(2017) Mark Derbyshire et al.   Genome Biology and Evolution

Advances on plant-pathogen interactions from molecular toward systems biology perspectives

(2017) Rémi Peyraud et al.   PLANT JOURNAL

STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1

(2017) Madlen Nietzsche et al.   PLANT PHYSIOLOGY

Transposable Elements Direct The Coevolution between Plants and Microbes

(2017) Michael F. Seidl et al.   TRENDS IN GENETICS

Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance

(2017) Thomas Badet et al.   PLoS Genetics

Codon optimization underpins generalist parasitism in fungi

(2017) Thomas Badet et al.   eLife

Plant-Pathogen Effectors: Cellular Probes Interfering with Plant Defenses in Spatial and Temporal Manners

(2016) Tania Y. Toruño et al.   Annual Review of Phytopathology

A gapless genome sequence of the fungusBotrytis cinerea

(2016) Jan A. L. Van Kan et al.   MOLECULAR PLANT PATHOLOGY

RNAi in Plants: An Argonaute-Centered View

(2016) Xiaofeng Fang et al.   PLANT CELL

Transcriptome dynamics of Arabidopsis during sequential biotic and abiotic stresses

(2016) Silvia Coolen et al.   PLANT JOURNAL

The control of sclerotinia stem rot on oilseed rape (Brassica napus): current practices and future opportunities

(2016) M. C. Derbyshire et al.   PLANT PATHOLOGY

Overexpression of the brassinosteroid biosynthetic gene DWF4 in Brassica napus simultaneously increases seed yield and stress tolerance

(2016) Sangita Sahni et al.   Scientific Reports

The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics

(2016) Jason A. Corwin et al.   PLoS Genetics

Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum

(2016) Malick Mbengue et al.   Frontiers in Plant Science

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing

(2015) Damien Formey et al.   BMC GENOMICS

Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

(2015) Nicholas A. Mueth et al.   BMC GENOMICS

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Danger peptide receptor signaling in plants ensures basal immunity upon pathogen-induced depletion of BAK1

(2015) K. Yamada et al.   EMBO JOURNAL

Genome-wide analysis of small RNAs in the wheat pathogenic fungus Zymoseptoria tritici

(2015) Fen Yang   Fungal Biology

Pathogenic attributes of Sclerotinia sclerotiorum : Switching from a biotrophic to necrotrophic lifestyle

(2015) Mehdi Kabbage et al.   PLANT SCIENCE

Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae

(2015) Thomas Badet et al.   Frontiers in Plant Science

An Interspecies Comparative Analysis of the Predicted Secretomes of the Necrotrophic Plant Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2015) Steph Heard et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Secretome analysis reveals effector candidates associated with broad host range necrotrophy in the fungal plant pathogen Sclerotinia sclerotiorum

(2014) Koanna Guyon et al.   BMC GENOMICS

Resistance to phytopathogense tutti quanti: placing plant quantitative disease resistance on the map

(2014) Fabrice Roux et al.   MOLECULAR PLANT PATHOLOGY

CoLIde

(2013) Irina Mohorianu et al.   RNA Biology

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

An Atypical Kinase under Balancing Selection Confers Broad-Spectrum Disease Resistance in Arabidopsis

(2013) Carine Huard-Chauveau et al.   PLoS Genetics

Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing

(2012) Jiahong Zhou et al.   MOLECULAR GENETICS AND GENOMICS

Genome evolution in filamentous plant pathogens: why bigger can be better

(2012) Sylvain Raffaele et al.   NATURE REVIEWS MICROBIOLOGY

Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

(2012) Ramesh R. Vetukuri et al.   PLoS One

The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens

(2012) Daniel Croll et al.   PLoS Pathogens

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Measurable impact of RNA quality on gene expression results from quantitative PCR

(2011) Joëlle Vermeulen et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

TheArabidopsisLeucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens

(2011) Milena Roux et al.   PLANT CELL

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

(2011) J. A. Poland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

(2010) S. Raffaele et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Inverse‐Gene‐for‐Gene Infection Genetics and Coevolutionary Dynamics

(2009) Andrew Fenton et al.   AMERICAN NATURALIST

The RNA-induced Silencing Complex: A Versatile Gene-silencing Machine

(2009) Ashley J. Pratt et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arabidopsis Protein Kinases GRIK1 and GRIK2 Specifically Activate SnRK1 by Phosphorylating Its Activation Loop

(2009) W. Shen et al.   PLANT PHYSIOLOGY

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

(2009) M. Ghildiyal et al.   RNA

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Host-specific toxins: effectors of necrotrophic pathogenicity

(2008) Timothy L. Friesen et al.   CELLULAR MICROBIOLOGY

Shades of gray: the world of quantitative disease resistance

(2008) Jesse A. Poland et al.   TRENDS IN PLANT SCIENCE