Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

Regulation of small RNA stability: methylation and beyond

(2012) Lijuan Ji et al.   CELL RESEARCH

Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

(2012) Kurt H. Lamour et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint

(2012) Sam Guoping Gu et al.   NATURE GENETICS

Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing

(2012) Joern Toedling et al.   PLoS One

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

(2012) David E. L. Cooke et al.   PLoS Pathogens

Understanding and Exploiting Late Blight Resistance in the Age of Effectors

(2011) Vivianne G.A.A. Vleeshouwers et al.   Annual Review of Phytopathology

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

(2011) Cristiano C Nunes et al.   BMC GENOMICS

How do oomycete effectors interfere with plant life?

(2011) Joost HM Stassen et al.   CURRENT OPINION IN PLANT BIOLOGY

Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element

(2011) Ramesh R. Vetukuri et al.   Fungal Biology

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

(2011) J. Wang et al.   GENOME RESEARCH

Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans

(2011) RAMESH R. VETUKURI et al.   MOLECULAR PLANT PATHOLOGY

Cloning and Characterization of R3b; Members of the R3 Superfamily of Late Blight Resistance Genes Show Sequence and Functional Divergence

(2011) Guangcun Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions

(2011) Huan Wang et al.   PLANT JOURNAL

Characterization of the Small RNA Transcriptome of the Diatom, Thalassiosira pseudonana

(2011) Trina M. Norden-Krichmar et al.   PLoS One

Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface

(2011) T. O. Bozkurt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytophthora sojae Avirulence Effector Avr3b is a Secreted NADH and ADP-ribose Pyrophosphorylase that Modulates Plant Immunity

(2011) Suomeng Dong et al.   PLoS Pathogens

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

Crypton transposons: identification of new diverse families and ancient domestication events

(2011) Kenji K Kojima et al.   Mobile DNA

Target-align: a tool for plant microRNA target identification: Fig. 1.

(2010) Fuliang Xie et al.   BIOINFORMATICS

Sequencing bias: comparison of different protocols of MicroRNA library construction

(2010) Geng Tian et al.   BMC BIOTECHNOLOGY

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

(2010) Sylvain Raffaele et al.   BMC GENOMICS

Dicer-Independent Primal RNAs Trigger RNAi and Heterochromatin Formation

(2010) Mario Halic et al.   CELL

Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

Small RNA sorting: matchmaking for Argonautes

(2010) Benjamin Czech et al.   NATURE REVIEWS GENETICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

(2010) J. I. B. Bos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient class of translocated oomycete effectors targets the host nucleus

(2010) S. Schornack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs

(2010) N. C. Welker et al.   RNA

A Complex Small RNA Repertoire Is Generated by a Plant/Fungal-Like Machinery and Effected by a Metazoan-Like Argonaute in the Single-Cell Human Parasite Toxoplasma gondii

(2010) Laurence Braun et al.   PLoS Pathogens

Genome-wide profiling of Populus small RNAs

(2009) Daniel Klevebring et al.   BMC GENOMICS

Small RNAs as Guardians of the Genome

(2009) Colin D. Malone et al.   CELL

A SingledicerGene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs inMucor circinelloides

(2009) Juan P. de Haro et al.   EUKARYOTIC CELL

Small RNAs in transcriptional gene silencing and genome defence

(2009) Danesh Moazed   NATURE

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

In Planta Expression Screens of Phytophthora infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum bulbocastanum Disease Resistance Protein Rpi-blb2

(2009) S.-K. Oh et al.   PLANT CELL

SHRiMP: Accurate Mapping of Short Color-space Reads

(2009) Stephen M. Rumble et al.   PLoS Computational Biology

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

A novelPhytophthora infestanshaustorium-specific membrane protein is required for infection of potato

(2008) Anna O. Avrova et al.   CELLULAR MICROBIOLOGY

Optimization of transgene-mediated silencing in Phytophthora infestans and its association with small-interfering RNAs

(2008) Audrey M.V. Ah-Fong et al.   FUNGAL GENETICS AND BIOLOGY

Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans

(2008) S. Grouffaud et al.   MICROBIOLOGY-SGM

Internuclear gene silencing in Phytophthora infestans is established through chromatin remodelling

(2008) P. van West et al.   MICROBIOLOGY-SGM

Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding

(2008) Clement K.M. Tsui et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phytophthora infestans: the plant (and R gene) destroyer

(2008) WILLIAM FRY   MOLECULAR PLANT PATHOLOGY

The Phytophthora infestans Avirulence Gene Avr4 Encodes an RXLR-dEER Effector

(2008) Pieter M. J. A. van Poppel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gene Expression Profiling During Asexual Development of the Late Blight Pathogen Phytophthora infestans Reveals a Highly Dynamic Transcriptome

(2008) Howard S. Judelson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

(2008) Toshiaki Watanabe et al.   NATURE

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells

(2008) M. Ghildiyal et al.   SCIENCE