First Estimation of the Spontaneous Mutation Rate in Diatoms

The Mutation Rate and the Age of the Sex Chromosomes in Silene latifolia

(2018) Marc Krasovec et al.   CURRENT BIOLOGY

GC content elevates mutation and recombination rates in the yeastSaccharomyces cerevisiae

(2018) Denis A. Kiktev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex

(2018) Hongan Long et al.   G3-Genes Genomes Genetics

Evolutionary determinants of genome-wide nucleotide composition

(2018) Hongan Long et al.   Nature Ecology & Evolution

One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing

(2018) Manuel Serif et al.   Nature Communications

Spontaneous mutation rate as a source of diversity for improving desirable traits in cultured microalgae

(2018) Marc Krasovec et al.   Algal Research-Biomass Biofuels and Bioproducts

Old Trade, New Tricks: Insights into the Spontaneous Mutation Process from the Partnering of Classical Mutation Accumulation Experiments with High-Throughput Genomic Approaches

(2018) Vaishali Katju et al.   Genome Biology and Evolution

Spontaneous mutations of a model heterotrophic marine bacterium

(2017) Ying Sun et al.   ISME Journal

Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes

(2017) Marc Krasovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

(2017) Thomas Mock et al.   NATURE

Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate

(2017) Chungang Feng et al.   eLife

Population genomics of picophytoplankton unveils novel chromosome hypervariability

(2017) Romain Blanc-Mathieu et al.   Science Advances

The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa

(2016) Jeremy R. Dettman et al.   BMC GENOMICS

Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects

(2016) Haoxuan Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spontaneous Mutation Accumulation inDaphnia pulexin Selection-Free vs. Competitive Environments

(2016) Jullien M. Flynn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations inVibrio choleraeandVibrio fischeri

(2016) Marcus M. Dillon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic drift, selection and the evolution of the mutation rate

(2016) Michael Lynch et al.   NATURE REVIEWS GENETICS

Insights into global diatom distribution and diversity in the world’s ocean

(2016) Shruti Malviya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation rate analysis via parent–progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

(2016) Zhengqing Xie et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A CRISPR/Cas9 system adapted for gene editing in marine algae

(2016) Marianne Nymark et al.   Scientific Reports

Multi-nucleotide de novo Mutations in Humans

(2016) Søren Besenbacher et al.   PLoS Genetics

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia

(2015) Marcus M. Dillon et al.   GENETICS

Mutation Rates in Plastid Genomes: They Are Lower than You Might Think

(2015) David Roy Smith   Genome Biology and Evolution

Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice

(2015) Arikuni Uchimura et al.   GENOME RESEARCH

Extensive de novo mutation rate variation between individuals and across the genome ofChlamydomonas reinhardtii

(2015) Rob W. Ness et al.   GENOME RESEARCH

Direct Estimate of the Spontaneous Mutation Rate Uncovers the Effects of Drift and Recombination in theChlamydomonas reinhardtiiPlastid Genome

(2015) Rob W. Ness et al.   MOLECULAR BIOLOGY AND EVOLUTION

Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation–Accumulation Experiments

(2015) Way Sung et al.   MOLECULAR BIOLOGY AND EVOLUTION

Background Mutational Features of the Radiation-Resistant BacteriumDeinococcus radiodurans

(2015) Hongan Long et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

(2015) David Roy Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia

(2015) Marcus M. Dillon et al.   GENETICS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes

(2014) Jason T. Huff et al.   CELL

Opposing Forces of A/T-Biased Mutations and G/C-Biased Gene Conversions Shape the Genome of the NematodePristionchus pacificus

(2014) Andreas M. Weller et al.   GENETICS

Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations

(2014) Caifu Jiang et al.   GENOME RESEARCH

Estimation of the Spontaneous Mutation Rate in Heliconius melpomene

(2014) Peter D. Keightley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Precise estimates of mutation rate and spectrum in yeast

(2014) Y. O. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Erratum: Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

(2014) Alaguraj Veluchamy et al.   Nature Communications

The plant mitochondrial genome: Dynamics and maintenance

(2013) José M. Gualberto et al.   BIOCHIMIE

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

(2013) Klaas Vandepoele et al.   ENVIRONMENTAL MICROBIOLOGY

Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster

(2013) Daniel R. Schrider et al.   GENETICS

High-efficiency nuclear transformation of the diatom Phaeodactylum tricornutum by electroporation

(2013) Chunye Zhang et al.   Marine Genomics

The World Ocean Silica Cycle

(2012) Paul J. Tréguer et al.   Annual Review of Marine Science

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes

(2012) Dee R. Denver et al.   Genome Biology and Evolution

Twenty-Fold Difference in Evolutionary Rates between the Mitochondrial and Plastid Genomes of Species with Secondary Red Plastids

(2012) David Roy Smith et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

(2012) Gerda Saxer et al.   PLoS One

Extraordinary genome stability in the ciliate Paramecium tetraurelia

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mendelian Inheritance Pattern and High Mutation Rates of Microsatellite Alleles in the Diatom Pseudo-nitzschia multistriata

(2012) Sylvie V.M. Tesson et al.   PROTIST

High Mutation Rates in the Mitochondrial Genomes of Daphnia pulex

(2011) S. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

(2011) Christopher B Ford et al.   NATURE GENETICS

Divergent Roles for the Two PolI-Like Organelle DNA Polymerases of Arabidopsis

(2011) J.-S. Parent et al.   PLANT PHYSIOLOGY

Similar Relative Mutation Rates in the Three Genetic Compartments of Mesostigma and Chlamydomonas

(2011) Jimeng Hua et al.   PROTIST

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The value of estuarine and coastal ecosystem services

(2010) Edward B. Barbier et al.   ECOLOGICAL MONOGRAPHS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Low Nucleotide Diversity for the Expanded Organelle and Nuclear Genomes of Volvox carteri Supports the Mutational-Hazard Hypothesis

(2010) D. R. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Evidence of Selection upon Genomic GC-Content in Bacteria

(2010) Falk Hildebrand et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes

(2009) Laurent Duret et al.   Annual Review of Genomics and Human Genetics

Oceanographic and Biogeochemical Insights from Diatom Genomes

(2009) Chris Bowler et al.   Annual Review of Marine Science

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The life of diatoms in the world's oceans

(2009) E. Virginia Armbrust   NATURE

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis

(2008) Peter G. Kroth et al.   PLoS One

Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle

(2008) I. J. Tsai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome mutational biases in bacteria

(2008) P. A. Lind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

(2008) A. E. Allen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does Mutation Rate Depend on Itself

(2008) Charles F Baer   PLOS BIOLOGY