Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation–Accumulation Experiments

Precise estimates of mutation rate and spectrum in yeast

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Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster

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The influence of genomic context on mutation patterns in the human genome inferred from rare variants

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Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes

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Mutation Rates, Spectra, and Genome-Wide Distribution of Spontaneous Mutations in Mismatch Repair Deficient Yeast

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Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice

(2012) Qingpo Liu   PLoS One

Extraordinary genome stability in the ciliate Paramecium tetraurelia

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

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Drift-barrier hypothesis and mutation-rate evolution

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Breaking the rules: bacteria that use several DNA polymerase IIIs

(2011) Charles S McHenry   EMBO REPORTS

Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork

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Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes

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Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

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Strand-specific mutational bias influences codon usage of weakly expressed genes in Escherichia coli

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Measurements of spontaneous rates of mutations in the recent past and the near future

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Forces that influence the evolution of codon bias

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The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

The Extinction Dynamics of Bacterial Pseudogenes

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The Sequence Alignment/Map format and SAMtools

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Fast and accurate short read alignment with Burrows-Wheeler transform

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Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes

(2009) D. R. Denver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria

(2009) N. A. Moran et al.   SCIENCE

Mutation Patterns in the Human Genome: More Variable Than Expected

(2009) Laurent Duret   PLOS BIOLOGY

Selection on Codon Bias

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GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias

(2008) Antonio Marín et al.   JOURNAL OF THEORETICAL BIOLOGY

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster

(2008) Cathy Haag-Liautard et al.   PLOS BIOLOGY

Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection

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