Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize

Role of heterotrimeric Gα proteins in maize development and enhancement of agronomic traits

(2018) Qingyu Wu et al.   PLoS Genetics

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

(2018) John T. Lovell et al.   Nature Communications

Adaptation despite gene flow? Low recombination helps

(2017) David A. Marques   MOLECULAR ECOLOGY

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

Complex genetic architecture underlies maize tassel domestication

(2017) Guanghui Xu et al.   NEW PHYTOLOGIST

Adapting Genotyping-by-Sequencing for Rice F2 Populations

(2017) Tomoyuki Furuta et al.   G3-Genes Genomes Genetics

Construction of the third-generation Zea mays haplotype map

(2017) Robert Bukowski et al.   GigaScience

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans

(2016) Sriram Sankararaman et al.   CURRENT BIOLOGY

Revisiting a classic case of introgression: hybridization and gene flow in Californian sunflowers

(2016) Gregory L. Owens et al.   MOLECULAR ECOLOGY

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

(2016) Jessen V Bredeson et al.   NATURE BIOTECHNOLOGY

Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits

(2016) Byoung Il Je et al.   NATURE GENETICS

nana plant2 encodes a maize ortholog of the Arabidopsis brassinosteroid biosynthesis protein Dwarf1, identifying developmental interactions between brassinosteroids and gibberellins

(2016) Norman B Best et al.   PLANT PHYSIOLOGY

Phytoglobins Improve Hypoxic Root Growth by Alleviating Apical Meristem Cell Death

(2016) Mohamed M. Mira et al.   PLANT PHYSIOLOGY

Characterization and Transposon Mutagenesis of the Maize (Zea mays) Pho1 Gene Family

(2016) M. Nancy Salazar-Vidal et al.   PLoS One

Borrowed alleles and convergence in serpentine adaptation

(2016) Brian J. Arnold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

(2015) Alex D. Twyford et al.   EVOLUTION

Independent Molecular Basis of Convergent Highland Adaptation in Maize

(2015) Shohei Takuno et al.   GENETICS

Functional Organization of the Genome May Shape the Species Boundary in the House Mouse

(2015) Václav Janoušek et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower

(2015) Kenneth D. Whitney et al.   MOLECULAR ECOLOGY

MaizeGDB update: new tools, data and interface for the maize model organism database

(2015) Carson M. Andorf et al.   NUCLEIC ACIDS RESEARCH

Independent Molecular Basis of Convergent Highland Adaptation in Maize

(2015) Shohei Takuno et al.   GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Mapping the Diversity of Maize Races in Mexico

(2014) Hugo Perales et al.   PLoS One

MaizeSBP-boxtranscription factorsunbranched2andunbranched3affect yield traits by regulating the rate of lateral primordia initiation

(2014) George S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphorus acquisition and internal utilization efficiency among maize landraces from the central Mexican highlands

(2013) Jeannette S. Bayuelo-Jiménez et al.   FIELD CROPS RESEARCH

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

(2013) Filipe G. Vieira et al.   GENOME RESEARCH

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Pod Corn Is Caused by Rearrangement at the Tunicate1 Locus

(2012) J.-J. Han et al.   PLANT CELL

Inferences from the Historical Distribution of Wild and Domesticated Maize Provide Ecological and Evolutionary Insight

(2012) Matthew B. Hufford et al.   PLoS One

Preceramic maize from Paredones and Huaca Prieta, Peru

(2012) A. Grobman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

Identification of thePr1Gene Product Completes the Anthocyanin Biosynthesis Pathway of Maize

(2011) Mandeep Sharma et al.   GENETICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Persistence of sunflower crop traits and fitness in Helianthus petiolaris populations

(2011) A. Gutierrez et al.   PLANT BIOLOGY

Conspecific Crop-Weed Introgression Influences Evolution of Weedy Rice (Oryza sativa f. spontanea) across a Geographical Range

(2011) Han-Bing Xia et al.   PLoS One

Brassinosteroid control of sex determination in maize

(2011) T. Hartwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic signals of origin, spread, and introgression in a large sample of maize landraces

(2010) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The diffusion of maize to the southwestern United States and its impact

(2009) William L. Merrill et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico

(2009) D. R. Piperno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

Asymmetrical local adaptation of maize landraces along an altitudinal gradient

(2008) Kristin Mercer et al.   Evolutionary Applications