MaizeGDB update: new tools, data and interface for the maize model organism database
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Title
MaizeGDB update: new tools, data and interface for the maize model organism database
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 44, Issue D1, Pages D1195-D1201
Publisher
Oxford University Press (OUP)
Online
2015-10-03
DOI
10.1093/nar/gkv1007
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- (2014) Jeffrey A. Martin et al. Scientific Reports
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- (2013) J. W. Walley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- Intraspecific variation of recombination rate in maize
- (2013) Eva Bauer et al. GENOME BIOLOGY
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- (2012) James C. Schnable et al. Genome Biology and Evolution
- Maize HapMap2 identifies extant variation from a genome in flux
- (2012) Jer-Ming Chia et al. NATURE GENETICS
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
- (2012) Laurel Cooper et al. PLANT AND CELL PHYSIOLOGY
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- (2012) Rohan V. Patel et al. PLANT JOURNAL
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