Using hyperspectral analysis as a potential high throughput phenotyping tool in GWAS for protein content of rice quality

Identification of candidate genes for gelatinization temperature, gel consistency and pericarp color by GWAS in rice based on SLAF-sequencing

(2018) Xinghai Yang et al.   PLoS One

In-field High Throughput Phenotyping and Cotton Plant Growth Analysis Using LiDAR

(2018) Shangpeng Sun et al.   Frontiers in Plant Science

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Hyperspectral reflectance imaging combined with carbohydrate metabolism analysis for diagnosis of citrus Huanglongbing in different seasons and cultivars

(2018) Haiyong Weng et al.   SENSORS AND ACTUATORS B-CHEMICAL

Mechanisms of wheat (Triticum aestivum) grain storage proteins in response to nitrogen application and its impacts on processing quality

(2018) Ting Zheng et al.   Scientific Reports

High-throughput physiological phenotyping and screening system for the characterization of plant-environment interactions

(2017) Ofer Halperin et al.   PLANT JOURNAL

Overexpression of SlPRE2, an atypical bHLH transcription factor, affects plant morphology and fruit pigment accumulation in tomato

(2017) Zhiguo Zhu et al.   Scientific Reports

An integrated hyperspectral imaging and genome-wide association analysis platform provides spectral and genetic insights into the natural variation in rice

(2017) Hui Feng et al.   Scientific Reports

Detection of rice phenology through time series analysis of ground-based spectral index data

(2016) Hengbiao Zheng et al.   FIELD CROPS RESEARCH

Genome wide association study (GWAS) for grain yield in rice cultivated under water deficit

(2016) Gabriel Feresin Pantalião et al.   GENETICA

Estimating mineral abundances of clay and gypsum mixtures using radiative transfer models applied to visible-near infrared reflectance spectra

(2016) K.M. Robertson et al.   ICARUS

Understanding the Jasmine phenotype of rice through metabolite profiling and sensory evaluation

(2016) Venea Dara Daygon et al.   Metabolomics

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Overexpression of a glyoxalase gene, OsGly I , improves abiotic stress tolerance and grain yield in rice ( Oryza sativa L.)

(2016) Zhengming Zeng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide association study of rice (Oryza sativaL.) leaf traits with a high-throughput leaf scorer

(2015) Wanneng Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits

(2015) Huan Wang et al.   PLANT JOURNAL

Review on characterization of maize phenotypic diversity: from genome and genotyping to phenomics and high-throughput phenotyping

(2015) Ying Zhang et al.   RESEARCH ON CROPS

Field Spectroscopy in the VNIR-SWIR Region to Discriminate between Mediterranean Native Plants and Exotic-Invasive Shrubs Based on Leaf Tannin Content

(2015) Jan Lehmann et al.   Remote Sensing

Ubiquitin ligase EL5 maintains the viability of root meristems by influencing cytokinin-mediated nitrogen effects in rice

(2014) Susumu Mochizuki et al.   JOURNAL OF EXPERIMENTAL BOTANY

The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate Pollen Development in Rice

(2014) S.-S. Ko et al.   PLANT CELL

The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development

(2014) Z. Fu et al.   PLANT CELL

Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response

(2014) Huijuan Zhang et al.   PLANT CELL REPORTS

Estimating rice chlorophyll content and leaf nitrogen concentration with a digital still color camera under natural light

(2014) Yuan Wang et al.   Plant Methods

A Review of Imaging Techniques for Plant Phenotyping

(2014) Lei Li et al.   SENSORS

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Diversity of Maize Kernels from a Breeding Program for Protein Quality: I. Physical, Biochemical, Nutrient, and Color Traits

(2013) Abdullah A. Jaradat et al.   CROP SCIENCE

Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies

(2013) Wanneng Yang et al.   CURRENT OPINION IN PLANT BIOLOGY

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice Seed Cultivar Identification Using Near-Infrared Hyperspectral Imaging and Multivariate Data Analysis

(2013) Wenwen Kong et al.   SENSORS

Detection of Crude Protein, Crude Starch, and Amylose for Rice by Hyperspectral Reflectance

(2013) Ming-Bo Liu et al.   SPECTROSCOPY LETTERS

Estimation of leaf water content in cotton by means of hyperspectral indices

(2012) Qiu-xiang Yi et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase

(2012) Huu Cuong Nguyen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice

(2012) Dany Heang et al.   PLoS One

Sample size formulas for estimating intraclass correlation coefficients with precision and assurance

(2012) G. Y. Zou   STATISTICS IN MEDICINE

Relationships of leaf nitrogen concentration and canopy nitrogen density with spectral features parameters and narrow-band spectral indices calculated from field winter wheat (Triticum aestivum L.) spectra

(2011) Chunjiang Zhao et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice

(2011) Wenxuan Li et al.   JOURNAL OF PLANT PHYSIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing

(2011) Joke Reumers et al.   NATURE BIOTECHNOLOGY

A novel machine-vision-based facility for the automatic evaluation of yield-related traits in rice

(2011) Lingfeng Duan et al.   Plant Methods

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Application of neural networks to discriminate fungal infection levels in rice panicles using hyperspectral reflectance and principal components analysis

(2010) Zhan-Yu Liu et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis

(2009) Jing Zhou et al.   JOURNAL OF PLANT PHYSIOLOGY

Regulation of Arabidopsis Brassinosteroid Signaling by Atypical Basic Helix-Loop-Helix Proteins

(2009) H. Wang et al.   PLANT CELL

QTL mapping for crude protein and protein fraction contents in rice (Oryza sativa L.)

(2008) Wenwei Zhang et al.   JOURNAL OF CEREAL SCIENCE

Sensory and instrumental characterisation of Cabernet Franc grapes according to ripening stages and growing location

(2007) Marine Le Moigne et al.   FOOD QUALITY AND PREFERENCE