Bacterial community structure and function distinguish gut sites in captive red‐shanked doucs ( Pygathrix nemaeus )

The inside tract: The appendicular, cecal, and colonic microbiome of captive aye-ayes

(2018) Lydia K. Greene et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

First report of foregut microbial community in proboscis monkeys: Are diverse forests a reservoir for diverse microbiomes?

(2018) Takashi Hayakawa et al.   Environmental Microbiology Reports

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

(2018) Jonathan B. Clayton et al.   Scientific Reports

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate

(2018) Pål Trosvik et al.   Microbiome

SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control

(2018) Gabriel A. Al-Ghalith et al.   mSystems

The critical role of dietary foliage in maintaining the gut microbiome and metabolome of folivorous sifakas

(2018) Lydia K. Greene et al.   Scientific Reports

US Immigration Westernizes the Human Gut Microbiome

(2018) Pajau Vangay et al.   CELL

Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species

(2017) Vanessa L. Hale et al.   MICROBIAL ECOLOGY

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi )

(2017) Andrea Springer et al.   Ecology and Evolution

Incorporating the gut microbiota into models of human and non-human primate ecology and evolution

(2016) Katherine R. Amato   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Compositional data analysis of the microbiome: fundamentals, tools, and challenges

(2016) Matthew C.B. Tsilimigras et al.   ANNALS OF EPIDEMIOLOGY

Microbial diversity in forestomach and caecum contents of the greater long-tailed hamster Tscherskia triton (Rodentia: Cricetidae)

(2016) Akio Shinohara et al.   MAMMALIAN BIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Captivity humanizes the primate microbiome

(2016) Jonathan B. Clayton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using the gut microbiota as a novel tool for examining colobine primate GI health

(2016) Katherine R. Amato et al.   Global Ecology and Conservation

Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions

(2016) Alejandro Salgado-Flores et al.   PLoS One

Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque

(2015) Koji Yasuda et al.   Cell Host & Microbe

Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology

(2015) Andres Gomez et al.   MOLECULAR ECOLOGY

Excretion patterns of solute and different-sized particle passage markers in foregut-fermenting proboscis monkey (Nasalis larvatus) do not indicate an adaptation for rumination

(2015) Ikki Matsuda et al.   PHYSIOLOGY & BEHAVIOR

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

(2015) Xochitl C Morgan et al.   GENOME BIOLOGY

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

The giraffe (Giraffa camelopardalis) rumen microbiome

(2014) Michael Roggenbuck et al.   FEMS MICROBIOLOGY ECOLOGY

High-Throughput DNA Sequencing of the Ruminal Bacteria from Moose (Alces alces) in Vermont, Alaska, and Norway

(2014) Suzanne L. Ishaq et al.   MICROBIAL ECOLOGY

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history

(2014) Xuming Zhou et al.   NATURE GENETICS

Diversity of Rumen Bacteria in Canadian Cervids

(2014) Robert J. Gruninger et al.   PLoS One

Bacteria and Methanogens Differ along the Gastrointestinal Tract of Chinese Roe Deer (Capreolus pygargus)

(2014) Zhipeng Li et al.   PLoS One

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Assessing the Jarman–Bell Principle: Scaling of intake, digestibility, retention time and gut fill with body mass in mammalian herbivores

(2012) Dennis W.H. Müller et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Microbes and the gut-brain axis

(2012) P. Bercik et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Analysis of the hydrogenotrophic microbiota of wild and captive black howler monkeys (Alouatta pigra) in palenque national park, Mexico

(2011) Noriko Nakamura et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Seasonality of group size, feeding, and breeding in wild red-shanked douc langurs (Lao PDR)

(2011) Phaivanh Phiapalath et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Iterative stepwise regression imputation using standard and robust methods

(2011) Matthias Templ et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Molecular diversity of the foregut bacteria community in the dromedary camel (Camelus dromedarius)

(2011) Anjas A. Samsudin et al.   ENVIRONMENTAL MICROBIOLOGY

Status of the phylogenetic diversity census of ruminal microbiomes

(2011) Minseok Kim et al.   FEMS MICROBIOLOGY ECOLOGY

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Evolutionary adaptations of ruminants and their potential relevance for modern production systems

(2010) M. Clauss et al.   Animal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment

(2010) William J. Kelly et al.   PLoS One

Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities

(2010) Suleyman Yildirim et al.   PLoS One

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

(2010) Howard Ochman et al.   PLOS BIOLOGY

Comparative chewing efficiency in mammalian herbivores

(2009) Julia Fritz et al.   OIKOS

Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella

(2008) T. Maruo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE