Bacteria and Methanogens Differ along the Gastrointestinal Tract of Chinese Roe Deer (Capreolus pygargus)

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen bacterial community evaluated by 454 pyrosequencing and terminal restriction fragment length polymorphism analyses in dairy sheep fed marine algae

(2014) T. Castro-Carrera et al.   JOURNAL OF DAIRY SCIENCE

High-Throughput DNA Sequencing of the Ruminal Bacteria from Moose (Alces alces) in Vermont, Alaska, and Norway

(2014) Suzanne L. Ishaq et al.   MICROBIAL ECOLOGY

Diversity of Rumen Bacteria in Canadian Cervids

(2014) Robert J. Gruninger et al.   PLoS One

Bacterial diversity associated with feeding dry forage at different dietary concentrations in the rumen contents of Mehshana buffalo (Bubalus bubalis) using 16S pyrotags

(2013) D.W. Pitta et al.   ANAEROBE

Rumen Methanogenic Genotypes Differ in Abundance According to Host Residual Feed Intake Phenotype and Diet Type

(2013) CIara A. Carberry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China

(2013) Zhi Li et al.   BMC MICROBIOLOGY

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Differences in the Methanogen Population Exist in Sika Deer (Cervus nippon) Fed Different Diets in China

(2013) Zhi Peng Li et al.   MICROBIAL ECOLOGY

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing

(2013) Christopher J. Barker et al.   VETERINARY MICROBIOLOGY

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

Diversity of gut methanogens in herbivorous animals

(2012) B. St-Pierre et al.   Animal

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanogens and Methanogenesis in the Rumens and Ceca of Lambs Fed Two Different High-Grain-Content Diets

(2012) M. Popova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos)

(2012) Benoit St-Pierre et al.   BMC MICROBIOLOGY

Insight into the bacterial gut microbiome of the North American moose (Alces alces)

(2012) Suzanne L Ishaq et al.   BMC MICROBIOLOGY

Biodiversity and composition of methanogenic populations in the rumen of cows fed alfalfa hay or triticale straw

(2012) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

454 Pyrosequencing Reveals a Shift in Fecal Microbiota of Healthy Adult Men Consuming Polydextrose or Soluble Corn Fiber

(2012) Seema Hooda et al.   JOURNAL OF NUTRITION

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Differences in the Rumen Methanogen Populations of Lactating Jersey and Holstein Dairy Cows under the Same Diet Regimen

(2011) Erin E. King et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens

(2011) Nilusha Malmuthuge et al.   FEMS MICROBIOLOGY ECOLOGY

Methanogen community structure in the rumens of farmed sheep, cattle and red deer fed different diets

(2011) Jeyamalar Jeyanathan et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Relationship between rumen methanogens and methane production in dairy cows fed diets supplemented with a feed enzyme additive

(2011) M. Zhou et al.   JOURNAL OF APPLIED MICROBIOLOGY

Impact of High-Concentrate Feeding and Low Ruminal pH on Methanogens and Protozoa in the Rumen of Dairy Cows

(2011) Sarah E. Hook et al.   MICROBIAL ECOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

(2010) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis

(2010) Aschalew Z. Bekele et al.   FEMS MICROBIOLOGY LETTERS

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitigating climate change: the role of domestic livestock

(2009) M. Gill et al.   Animal

Community Composition and Density of Methanogens in the Foregut of the Tammar Wallaby (Macropus eugenii)

(2009) P. N. Evans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen microbial diversity in Svalbard reindeer, with particular emphasis on methanogenic archaea

(2009) Monica A. Sundset et al.   FEMS MICROBIOLOGY ECOLOGY

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY