Transcriptomes of Indian barnyard millet and barnyardgrass reveal putative genes involved in drought adaptation and micronutrient accumulation

Exploration of millet models for developing nutrient rich graminaceous crops

(2016) Mehanathan Muthamilarasan et al.   PLANT SCIENCE

The memory effect of magnetoelectric coupling in FeGaB/NiTi/PMN-PT multiferroic heterostructure

(2016) Ziyao Zhou et al.   Scientific Reports

Comparative transcriptome analysis highlights the crucial roles of photosynthetic system in drought stress adaptation in upland rice

(2016) Zheng-Feng Zhang et al.   Scientific Reports

The complete chloroplast genome sequence of Indian barnyard millet, Echinochloa frumentacea (Poaceae)

(2016) Sampath Perumal et al.   Mitochondrial DNA Part B-Resources

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies

(2016) Davis Gimode et al.   PLoS One

Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae)

(2016) Mohammad Vatanparast et al.   Scientific Reports

Comparative mapping combined with homology-based cloning of the rice genome reveals candidate genes for grain zinc and iron concentration in maize

(2015) Tiantian Jin et al.   BMC GENETICS

Comprehensive analysis of Panax ginseng root transcriptomes

(2015) Murukarthick Jayakodi et al.   BMC PLANT BIOLOGY

Barnyard millet - a potential food and feed crop of future

(2015) Salej Sood et al.   PLANT BREEDING

Uncovering the Differential Molecular Basis of Adaptive Diversity in Three Echinochloa Leaf Transcriptomes

(2015) Gyoungju Nah et al.   PLoS One

Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv.]

(2014) Shuo Zhang et al.   BMC GENOMICS

Expression profiling reveals functionally redundant multiple-copy genes related to zinc, iron and cadmium responses inBrassica rapa

(2014) Jimeng Li et al.   NEW PHYTOLOGIST

De Novo Assembly and Characterization of Developing Spikes Transcriptome of Finger Millet (Eleusine coracana): a Minor Crop Having Nutraceutical Properties

(2014) Anil Kumar et al.   PLANT MOLECULAR BIOLOGY REPORTER

Response of plants to water stress

(2014) Yuriko Osakabe et al.   Frontiers in Plant Science

Genome-Wide Development and Use of Microsatellite Markers for Large-Scale Genotyping Applications in Foxtail Millet [Setaria italica (L.)]

(2013) G. Pandey et al.   DNA RESEARCH

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

(2013) Tapan Kumar Mondal et al.   GENE

A Review of Microsatellite Markers and Their Applications in Rice Breeding Programs to Improve Blast Disease Resistance

(2013) Gous Miah et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Photosynthetic electron transport and specific photoprotective responses in wheat leaves under drought stress

(2013) Marek Zivcak et al.   PHOTOSYNTHESIS RESEARCH

De novo Assembly and Characterization of the Barnyardgrass (Echinochloa crus-galli) Transcriptome Using Next-Generation Pyrosequencing

(2013) Xia Yang et al.   PLoS One

Transcriptome Sequencing and Expression Analysis of Terpenoid Biosynthesis Genes in Litsea cubeba

(2013) Xiao-Jiao Han et al.   PLoS One

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

(2012) Jianan Zhang et al.   BMC GENOMICS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Microsatellite markers: an overview of the recent progress in plants

(2010) Rajwant K. Kalia et al.   EUPHYTICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS