Comprehensive analysis of Panax ginseng root transcriptomes

Transcript expression profiling for adventitious roots of Panax ginseng Meyer

(2014) Sathiyamoorthy Subramaniyam et al.   GENE

Major repeat components covering one-third of the ginseng (Panax ginsengC.A. Meyer) genome and evidence for allotetraploidy

(2014) Hong-Il Choi et al.   PLANT JOURNAL

Functional Analysis of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Encoding Genes in Triterpene Saponin-Producing Ginseng

(2014) Y.-J. Kim et al.   PLANT PHYSIOLOGY

Ginsenoside profiles and related gene expression during foliation in Panax ginseng Meyer

(2014) Yu-Jin Kim et al.   Journal of Ginseng Research

Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots

(2014) Murukarthick Jayakodi et al.   Journal of Ginseng Research

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

The root transcriptome for North American ginseng assembled and profiled across seasonal development

(2013) Di Wu et al.   BMC GENOMICS

Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer

(2013) Chunfang Li et al.   BMC GENOMICS

Grouping and characterization of putative glycosyltransferase genes from Panax ginseng Meyer

(2013) Altanzul Khorolragchaa et al.   GENE

Genomics: the state of the art in RNA-seq analysis

(2013) Ian Korf   NATURE METHODS

Both the mevalonate and the non-mevalonate pathways are involved in ginsenoside biosynthesis

(2013) Shoujing Zhao et al.   PLANT CELL REPORTS

The world ginseng market and the ginseng (Korea)

(2013) In-Ho Baeg et al.   Journal of Ginseng Research

Karyotype analysis of Panax ginseng C.A.Meyer, 1843 (Araliaceae) based on rDNA loci and DAPI band distribution

(2012) Hyun Hee Kim et al.   Comparative Cytogenetics

An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development

(2012) Elinor P. Thompson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular characterization of the Brassica rapa auxin-repressed, superfamily genes, BrARP1 and BrDRM1

(2012) Jeongyeo Lee et al.   MOLECULAR BIOLOGY REPORTS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Cytochrome P450 CYP716A53v2 Catalyzes the Formation of Protopanaxatriol from Protopanaxadiol During Ginsenoside Biosynthesis in Panax Ginseng

(2012) Jung-Yeon Han et al.   PLANT AND CELL PHYSIOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

High-Throughput Sequencing and Characterization of the Small RNA Transcriptome Reveal Features of Novel and Conserved MicroRNAs in Panax ginseng

(2012) Bin Wu et al.   PLoS One

Development of Reproducible EST-derived SSR Markers and Assessment of Genetic Diversity in Panax ginseng Cultivars and Related Species

(2012) Hong-Il Choi et al.   Journal of Ginseng Research

Trends in Ginseng Research in 2010

(2012) Si-Kwan Kim et al.   Journal of Ginseng Research

EST-SSR Marker Sets for Practical Authentication of All Nine Registered Ginseng Cultivars in Korea

(2012) Nam-Hoon Kim et al.   Journal of Ginseng Research

Ginsenoside Re: Its chemistry, metabolism and pharmacokinetics

(2012) Dacheng Peng et al.   Chinese Medicine

Advances in study of ginsenoside biosynthesis pathway in Panax ginseng C. A. Meyer

(2011) Juan Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers

(2011) Hongmei Luo et al.   BMC GENOMICS

Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata

(2011) Fengyi Hu et al.   BMC PLANT BIOLOGY

A simple and rapid technique for the authentication of the ginseng cultivar, Yunpoong, using an SNP marker in a large sample of ginseng leaves

(2011) Hua Sun et al.   GENE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Cyt P450 Enzyme CYP716A47 Catalyzes the Formation of Protopanaxadiol from Dammarenediol-II During Ginsenoside Biosynthesis in Panax ginseng

(2011) Jung-Yeon Han et al.   PLANT AND CELL PHYSIOLOGY

454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng

(2011) S. Chen et al.   PLANT CELL REPORTS

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

(2010) Chao Sun et al.   BMC GENOMICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcript profiles ofPanax quinquefoliusfrom flower, leaf and root bring new insights into genes related to ginsenosides biosynthesis and transcriptional regulation

(2009) Qiong Wu et al.   PHYSIOLOGIA PLANTARUM

Ginsenoside Rb1 stimulates glucose uptake through insulin-like signaling pathway in 3T3-L1 adipocytes

(2008) Wenbin Shang et al.   JOURNAL OF ENDOCRINOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice

(2008) J. Yuan et al.   PLANT PHYSIOLOGY