Identification of Cancer Hallmarks Based on the Gene Co-expression Networks of Seven Cancers

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Predicting miRNA–disease association based on inductive matrix completion

(2018) Xing Chen et al.   BIOINFORMATICS

Predicting drug-disease associations by using similarity constrained matrix factorization

(2018) Wen Zhang et al.   BMC BIOINFORMATICS

Predicting drug-disease associations and their therapeutic function based on the drug-disease association bipartite network

(2018) Wen Zhang et al.   METHODS

Feature-derived graph regularized matrix factorization for predicting drug side effects

(2018) Wen Zhang et al.   NEUROCOMPUTING

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

EGBMMDA: Extreme Gradient Boosting Machine for MiRNA-Disease Association prediction

(2018) Xing Chen et al.   Cell Death & Disease

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

Manifold regularized matrix factorization for drug-drug interaction prediction

(2018) Wen Zhang et al.   JOURNAL OF BIOMEDICAL INFORMATICS

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

(2018) Wen Zhang et al.   PLoS Computational Biology

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases

(2016) Xing Chen et al.   BIOINFORMATICS

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Functional Genomic Screening Reveals Splicing of the EWS-FLI1 Fusion Transcript as a Vulnerability in Ewing Sarcoma

(2016) Patrick J. Grohar et al.   Cell Reports

Cancer prevention as part of precision medicine: ‘plenty to be done’

(2015) Bernard W. Stewart et al.   CARCINOGENESIS

DGIdb 2.0: mining clinically relevant drug–gene interactions

(2015) Alex H. Wagner et al.   NUCLEIC ACIDS RESEARCH

Systematic pan-cancer analysis of tumour purity

(2015) Dvir Aran et al.   Nature Communications

Using High-Throughput Transcriptomic Data for Prognosis: A Critical Overview and Perspectives

(2014) Eytan Domany   CANCER RESEARCH

Construction and investigation of breast-cancer-specific ceRNA network based on the mRNA and miRNA expression data

(2014) Xionghui Zhou et al.   IET Systems Biology

Phosphoproteomics Screen Reveals Akt Isoform-Specific Signals Linking RNA Processing to Lung Cancer

(2014) Ioannis Sanidas et al.   MOLECULAR CELL

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

(2014) Yang Yang et al.   Nature Communications

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

Crosstalk between Wnt Signaling and RNA Processing in Colorectal Cancer

(2013) Michael Bordonaro   Journal of Cancer

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

The cell cycle and cancer

(2011) Gareth H Williams et al.   JOURNAL OF PATHOLOGY

A general co-expression network-based approach to gene expression analysis: comparison and applications

(2010) Jianhua Ruan et al.   BMC Systems Biology

Cancer: More of polygenic disease and less of multiple mutations? A quantitative viewpoint

(2010) Anders Bredberg   CANCER

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE