Predicting drug-disease associations by using similarity constrained matrix factorization

Feature-derived graph regularized matrix factorization for predicting drug side effects

(2018) Wen Zhang et al.   NEUROCOMPUTING

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

Embedding of semantic predications

(2017) Trevor Cohen et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Drug-Target Interaction Prediction through Label Propagation with Linear Neighborhood Information

(2017) Wen Zhang et al.   MOLECULES

A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs

(2016) Dingfang Li et al.   BMC BIOINFORMATICS

The Comparative Toxicogenomics Database: update 2017

(2016) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

Clozapine improved the syndrome of inappropriate antidiuretic hormone secretion in a patient with treatment-resistant schizophrenia

(2016) Michiko Fujimoto et al.   PSYCHIATRY AND CLINICAL NEUROSCIENCES

Scoring multiple features to predict drug disease associations using information fusion and aggregation

(2016) H. Moghadam et al.   SAR AND QSAR IN ENVIRONMENTAL RESEARCH

Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features

(2016) Longqiang Luo et al.   PLoS One

DrugNet: Network-based drug–disease prioritization by integrating heterogeneous data

(2015) Víctor Martínez et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Predicting drug side effects by multi-label learning and ensemble learning

(2015) Wen Zhang et al.   BMC BIOINFORMATICS

Mining drug-disease relationships as a complement to medical genetics-based drug repositioning: Where a recommendation system meets genome-wide association studies

(2015) H Wang et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Graph-theory-based spectral feature selection for computer aided diagnosis of Parkinson's disease using T1-weighted MRI

(2015) Bharti Rana et al.   INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

Accurate Prediction of Immunogenic T-Cell Epitopes from Epitope Sequences Using the Genetic Algorithm-Based Ensemble Learning

(2015) Wen Zhang et al.   PLoS One

Drug repositioning by integrating target information through a heterogeneous network model

(2014) Wenhui Wang et al.   BIOINFORMATICS

Exploring the associations between drug side-effects and therapeutic indications

(2014) Fei Wang et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A Network-Based Classification Model for Deriving Novel Drug-Disease Associations and Assessing Their Molecular Actions

(2014) Min Oh et al.   PLoS One

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Drug Repositioning by Kernel-Based Integration of Molecular Structure, Molecular Activity, and Phenotype Data

(2013) Yongcui Wang et al.   PLoS One

Combining Drug and Gene Similarity Measures for Drug-Target Elucidation

(2011) Liat Perlman et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

PREDICT: a method for inferring novel drug indications with application to personalized medicine

(2011) A. Gottlieb et al.   Molecular Systems Biology

Ethanol protects cultured neurons against amyloid-β and α-synuclein-induced synapse damage

(2011) Clive Bate et al.   NEUROPHARMACOLOGY

Effects of olanzapine, sertindole and clozapine on MK-801 induced visual memory deficits in mice

(2011) Oguz Mutlu et al.   PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR

Systematic Drug Repositioning Based on Clinical Side-Effects

(2011) Lun Yang et al.   PLoS One

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

PubChem as a public resource for drug discovery

(2010) Qingliang Li et al.   DRUG DISCOVERY TODAY

PROMISCUOUS: a database for network-based drug-repositioning

(2010) J. von Eichborn et al.   NUCLEIC ACIDS RESEARCH

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)

(2009) Thomas C Wiegers et al.   BMC BIOINFORMATICS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Fast Gene Ontology based clustering for microarray experiments

(2009) Kristian Ovaska et al.   BioData Mining

Valproic acid inhibits Aβ production, neuritic plaque formation, and behavioral deficits in Alzheimer's disease mouse models

(2008) Hong Qing et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Levodopa ameliorates learning and memory deficits in a murine model of Alzheimer’s disease

(2008) Oliver Ambrée et al.   NEUROBIOLOGY OF AGING