Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity

Microbiomes in extremely acidic environments: functionalities and interactions that allow survival and growth of prokaryotes at low pH

(2018) Raquel Quatrini et al.   CURRENT OPINION IN MICROBIOLOGY

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes

(2018) Joel A Boyd et al.   NUCLEIC ACIDS RESEARCH

Regulation of specialised metabolites in Actinobacteria - expanding the paradigms

(2018) Paul A. Hoskisson et al.   Environmental Microbiology Reports

Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands

(2018) Svetlana E. Belova et al.   Frontiers in Microbiology

‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ

(2017) Olga V. Golyshina et al.   Nature Communications

Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms

(2017) Susanne Krause et al.   Scientific Reports

Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens

(2016) Kevin W. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lysobacter species: a potential source of novel antibiotics

(2016) Suresh Panthee et al.   ARCHIVES OF MICROBIOLOGY

Microbial communities, processes and functions in acid mine drainage ecosystems

(2016) Lin-xing Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

The novel extremely acidophilic, cell-wall-deficient archaeon Cuniculiplasma divulgatum gen. nov., sp. nov. represents a new family, Cuniculiplasmataceae fam. nov., of the order Thermoplasmatales

(2016) Olga V. Golyshina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

(2016) Olga V. Golyshina et al.   Scientific Reports

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

(2015) Rachid Ounit et al.   BMC GENOMICS

Comparison of the microbial communities of hot springs waters and the microbial biofilms in the acidic geothermal area of Copahue (Neuquén, Argentina)

(2015) María Sofía Urbieta et al.   EXTREMOPHILES

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

(2015) Mireia Fillol et al.   ISME Journal

Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat

(2015) Xueju Lin et al.   ISME Journal

Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage

(2014) Lin-xing Chen et al.   ISME Journal

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

(2014) Celia Méndez-García et al.   ISME Journal

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

(2013) Alexis P Yelton et al.   BMC GENOMICS

Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings

(2013) Lin-xing Chen et al.   ENVIRONMENTAL MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities

(2012) Nicholas B. Justice et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaeal diversity: temporal variation in the arsenic-rich creek sediments of Carnoulès Mine, France

(2012) A. Volant et al.   EXTREMOPHILES

Comparative microbial ecology study of the sediments and the water column of the Río Tinto, an extreme acidic environment

(2012) Antonio García-Moyano et al.   FEMS MICROBIOLOGY ECOLOGY

Geomicrobiology of extremely acidic subsurface environments

(2012) David Barrie Johnson   FEMS MICROBIOLOGY ECOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Stratified active archaeal communities in the sediments of Jiulong River estuary, China

(2012) Qianqian Li et al.   Frontiers in Microbiology

Environmental, Biogeographic, and Biochemical Patterns of Archaea of the Family Ferroplasmaceae

(2011) Olga V. Golyshina   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and Temporal Analysis of the Microbial Community in the Tailings of a Pb-Zn Mine Generating Acidic Drainage

(2011) Li-Nan Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geomicrobiology of La Zarza-Perrunal Acid Mine Effluent (Iberian Pyritic Belt, Spain)

(2011) Elena González-Toril et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Diversity in Anaerobic Sediments at Río Tinto, a Naturally Acidic Environment with a High Heavy Metal Content

(2011) Irene Sánchez-Andrea et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal

(2011) Vitaly V. Kadnikov et al.   FEMS MICROBIOLOGY ECOLOGY

Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes

(2011) Shingo Kato et al.   FEMS MICROBIOLOGY LETTERS

Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm

(2011) Daniel S Jones et al.   ISME Journal

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Ferrimicrobium acidiphilum gen. nov., sp. nov. and Ferrithrix thermotolerans gen. nov., sp. nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria

(2009) D. B. Johnson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Biodiversity of Thermophilic Prokaryotes with Hydrolytic Activities in Hot Springs of Uzon Caldera, Kamchatka (Russia)

(2008) I. V. Kublanov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaeal diversity in acid mine drainage from Dabaoshan Mine, China

(2008) Guan-zhou Qiu et al.   JOURNAL OF BASIC MICROBIOLOGY